Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303B01f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g27300.1 68417.m03917 S-locus protein kinase, putative simila...    29   1.9  
At3g47770.1 68416.m05204 ABC transporter family protein AbcA, Di...    29   2.5  
At5g15340.1 68418.m01796 pentatricopeptide (PPR) repeat-containi...    28   3.3  
At4g04545.1 68417.m00665 Ulp1 protease family protein contains P...    28   4.4  
At2g32460.1 68415.m03965 myb family transcription factor (MYB101...    27   5.8  
At5g65110.1 68418.m08191 acyl-CoA oxidase (ACX2) identical to ac...    27   7.7  

>At4g27300.1 68417.m03917 S-locus protein kinase, putative similar
           to receptor protein kinase [Ipomoea trifida]
           gi|836954|gb|AAC23542; contains S-locus glycoprotein
           family domain, Pfam:PF00954
          Length = 815

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +2

Query: 188 LCGCRGACGFX-KFASINRCMQMFSPKQAHRWSLRCG 295
           +CG    CG   K      C+Q F PK   +W++  G
Sbjct: 297 ICGAYAVCGINSKNTPSCSCLQGFKPKSGRKWNISRG 333


>At3g47770.1 68416.m05204 ABC transporter family protein AbcA,
           Dictyostelium discoideum, U66526
          Length = 900

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 246 CRCSRQNKRTDGRCVVESTRLNLRSCFQA 332
           CRC+  +K  DG+C ++S  L   S  QA
Sbjct: 66  CRCADDDKNGDGKCEIKSCGLQYSSQNQA 94


>At5g15340.1 68418.m01796 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 623

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 19/43 (44%), Positives = 25/43 (58%)
 Frame = +3

Query: 294 ESTRLNLRSCFQAHRSFLRILSDLAAALATNHGDESSPPKRLT 422
           +  RL LR C  AHRSFLR   +L A L T+ G + +P   L+
Sbjct: 7   QKVRLLLRHC--AHRSFLRPGKELHAVLTTS-GLKKAPRSYLS 46


>At4g04545.1 68417.m00665 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 882

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -2

Query: 256 EHLHASVDGRELRESTRTPTSTKWIRERCAQITGRDFVQFVHTHINALP 110
           E +   V G+  R+  +   S K + E C+    R F Q  HTH+ + P
Sbjct: 389 ESIREVVSGQN-RQKAQKGESNKCVAESCSTKEHRSFDQPGHTHVGSQP 436


>At2g32460.1 68415.m03965 myb family transcription factor (MYB101)
           identical to putative transcription factor MYB101
           GI:18087348 from [Arabidopsis thaliana]
          Length = 490

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 21/82 (25%), Positives = 36/82 (43%)
 Frame = -2

Query: 406 GLDSSPWLVARAAAKSDKIRKKLRWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGR 227
           GL   PW     A  ++ +RK     W  +++ S +    +  S RL W  HL  +    
Sbjct: 17  GLKKGPWTTTEDAILTEYVRKHGEGNWNAVQKNSGLLRCGK--SCRLRWANHLRPN---- 70

Query: 226 ELRESTRTPTSTKWIRERCAQI 161
            L++ + TP   K I +  A++
Sbjct: 71  -LKKGSFTPDEEKIIIDLHAKL 91


>At5g65110.1 68418.m08191 acyl-CoA oxidase (ACX2) identical to
           acyl-CoA oxidase [Arabidopsis thaliana] GI:3044212
          Length = 692

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 131 VHELHEVPSGYLRASLPNPLCGCRGACGFXKFASINR 241
           VH L      Y+ +     L  CR ACG   +A++NR
Sbjct: 424 VHALSAGLKSYVTSYTAKALSVCREACGGHGYAAVNR 460


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,773,452
Number of Sequences: 28952
Number of extensions: 257476
Number of successful extensions: 616
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)