Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303A12f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0538 + 23739830-23740126,23740205-23740261,23740344-237404... 31 0.74
12_01_0777 - 7095081-7096259,7096636-7096725,7096827-7096902,709... 29 1.7
05_01_0162 - 1095020-1095202,1096114-1096188,1096939-1097039,109... 29 1.7
04_01_0508 + 6647812-6647820,6647864-6648226,6649351-6650673,665... 29 1.7
08_02_0751 + 20789843-20789908,20791152-20791313,20791516-207915... 29 2.3
08_02_0129 - 12876477-12876650,12877058-12877150 29 2.3
03_03_0040 - 13999040-13999179,13999524-13999638,13999759-139998... 29 3.0
07_03_0306 + 16496053-16496400 28 4.0
07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844... 28 5.2
06_03_0433 - 20718726-20719895 28 5.2
05_04_0086 - 17797792-17797810,17798049-17798234,17798319-177984... 28 5.2
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892... 28 5.2
02_05_0868 + 32342967-32343915,32344389-32344447 28 5.2
07_03_1621 + 28187846-28187915,28189214-28189293,28189485-281895... 27 6.9
06_03_1366 + 29601921-29602646 27 6.9
11_06_0599 + 25395606-25395705,25396465-25396544,25396901-253969... 27 9.1
08_01_0489 + 4280063-4280476 27 9.1
>02_04_0538 +
23739830-23740126,23740205-23740261,23740344-23740441,
23740565-23740640,23741316-23741345,23741833-23741961,
23742077-23742123,23742477-23742531,23742939-23743038,
23743568-23743674,23743760-23743906,23744232-23744378,
23744473-23744526,23744873-23744914
Length = 461
Score = 30.7 bits (66), Expect = 0.74
Identities = 21/45 (46%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +2
Query: 293 SCTEDGRCTPCS*RRSPFGTVPAAAEIQAGGCSK--SPANSPLRR 421
SC DG C C RR PAAAE+ GG SK P SP R
Sbjct: 68 SCRRDGGCGGCGCRRRRAKGKPAAAEL--GGTSKVALPDGSPHSR 110
>12_01_0777 -
7095081-7096259,7096636-7096725,7096827-7096902,
7097150-7097367,7097502-7097717,7097922-7098107,
7098181-7098303,7098399-7098514,7099254-7099832,
7101485-7101517,7102485-7103679,7103732-7103797,
7104843-7104905,7105328-7105411
Length = 1407
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = -3
Query: 402 AGLLLHPPAWISAAAGTVPNGERRQEHGVHRPSSV 298
AG LL P A + AG V +G+R + HG RP S+
Sbjct: 490 AGTLLQPVALGTTFAGRV-SGQRWKSHGTRRPPSM 523
>05_01_0162 -
1095020-1095202,1096114-1096188,1096939-1097039,
1097467-1097577,1097704-1097807,1098260-1098493,
1098583-1099304
Length = 509
Score = 29.5 bits (63), Expect = 1.7
Identities = 21/58 (36%), Positives = 24/58 (41%)
Frame = -3
Query: 432 SEK*RRSGEFAGLLLHPPAWISAAAGTVPNGERRQEHGVHRPSSVQERRPRSGVCVHS 259
SE R F L HPP W + PN E SS Q+R+P GV V S
Sbjct: 393 SELASRPHRFPLLTEHPPIWTAQPHPLFPNNEDASR------SSDQKRKPSEGVAVPS 444
>04_01_0508 +
6647812-6647820,6647864-6648226,6649351-6650673,
6653569-6653766,6654485-6654568,6655175-6655920,
6656480-6657341
Length = 1194
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 212 SNRAGCKQQKAGIAVLLCTHTPERGL 289
+N A +QK G+AVL C PE GL
Sbjct: 441 TNLADQNRQKHGVAVLACVKVPETGL 466
>08_02_0751 +
20789843-20789908,20791152-20791313,20791516-20791566,
20792096-20792160,20792385-20792459,20792603-20792780,
20793171-20793353,20793436-20793549,20793627-20793736,
20793826-20793904,20794035-20794172
Length = 406
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 308 RLQYKNEDRAPVYVYTAVPQYQPSAAYIQ 222
R Y N +RA Y+YT VP+ + A +Q
Sbjct: 184 RAAYNNPERAVEYLYTGVPEQAEAPAAVQ 212
>08_02_0129 - 12876477-12876650,12877058-12877150
Length = 88
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 308 RLQYKNEDRAPVYVYTAVPQYQPSAAYIQ 222
R Y N +RA Y+YT VP+ + A +Q
Sbjct: 16 RAAYNNPERAMEYLYTGVPEQAEAPAAVQ 44
>03_03_0040 -
13999040-13999179,13999524-13999638,13999759-13999818,
14000007-14000060,14000274-14000333,14000418-14000480,
14000552-14000595,14000671-14000755,14000904-14001028,
14001368-14001432,14001460-14001518,14001678-14001743,
14001870-14001935,14002019-14002105,14002168-14002257,
14002378-14002440,14003153-14003419
Length = 502
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +3
Query: 261 CVHIHRSAVFVLVLKTGGVRHVPDVVLRLELYPLQLRSRQEDVVRALRTHHF 416
C+HIHR+ +F+L + G + + R L+ + + +V +T HF
Sbjct: 216 CLHIHRNNMFILHIHAGWYSTMCFAINRTSLHSRVTKMAEFNVKDFAQTDHF 267
>07_03_0306 + 16496053-16496400
Length = 115
Score = 28.3 bits (60), Expect = 4.0
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Frame = -3
Query: 507 SRRRNYNRKRGKPQS*---GYKRKT-RGGSEK*RRSGEFAGL 394
+RRR R PQ G++ T RGG++ RRSGE AG+
Sbjct: 51 ARRRRSGELRATPQPGRRRGWRSSTDRGGNDVGRRSGEAAGM 92
>07_03_1667 +
28484069-28484071,28484151-28484240,28484339-28484491,
28484575-28484757,28486137-28486295
Length = 195
Score = 27.9 bits (59), Expect = 5.2
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 206 GIDHSNFKPHAKRNGLKFE 150
G+ HSN KP+ + G KFE
Sbjct: 164 GVPHSNTKPYVRSKGRKFE 182
>06_03_0433 - 20718726-20719895
Length = 389
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = -1
Query: 512 VPRDEETTTENAENLKVEGINEKLEEAPKSDAEVVSSQGS 393
V +E+T E+ N+K +G NE EEA K +A V SQ +
Sbjct: 163 VAHGDESTNEDQSNVKSDGSNE--EEAEKKEA--VDSQNA 198
>05_04_0086 -
17797792-17797810,17798049-17798234,17798319-17798407,
17798518-17798712,17799364-17799525,17799609-17799681,
17799929-17799996,17800086-17800133,17800223-17800288,
17800418-17800488,17800825-17800891
Length = 347
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +1
Query: 256 TAVYTYTGARSSFLY*RRAVYAMFLTSFSVWNCTRC 363
T +Y T AR+ Y AVY LT W C RC
Sbjct: 29 TPIYNSTLARTLAEY-TSAVYTADLTQLFSWTCERC 63
>03_02_0954 -
12687373-12687582,12688885-12689067,12689160-12689288,
12689375-12689464,12689548-12689550
Length = 204
Score = 27.9 bits (59), Expect = 5.2
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 206 GIDHSNFKPHAKRNGLKFE 150
G+ HSN KP+ + G KFE
Sbjct: 173 GVPHSNTKPYVRSKGRKFE 191
>02_05_0868 + 32342967-32343915,32344389-32344447
Length = 335
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +2
Query: 335 RSPFGTVPAAAEIQAGGC-SKSPANSPLRRHFSEPPRVFR 451
R P VP A Q G + SPA +P RR PP V R
Sbjct: 99 RQPAPAVPGRAFRQPGPAPAPSPAPAPPRRRMPSPPPVAR 138
>07_03_1621 +
28187846-28187915,28189214-28189293,28189485-28189550,
28189801-28189848,28189967-28190034,28190107-28190179,
28190284-28190445,28190620-28190814,28191114-28191190,
28191280-28191481
Length = 346
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 256 TAVYTYTGARSSFLY*RRAVYAMFLTSFSVWNCTRCS 366
T Y++T A + Y AVY LT+ W C+RC+
Sbjct: 33 TLNYSHTLAMTLVEY-ASAVYMTDLTALYTWTCSRCN 68
>06_03_1366 + 29601921-29602646
Length = 241
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 372 ISAAAGTVPNGERRQEHGVHRPSSVQERRPRSG 274
ISAAA P +++Q+H V R V R R+G
Sbjct: 58 ISAAAAAAPPSQQQQQHPVVRAVHVASVRIRNG 90
>11_06_0599 +
25395606-25395705,25396465-25396544,25396901-25396966,
25397076-25397123,25397226-25397293,25397404-25397476,
25397573-25397734,25398042-25398236,25398325-25398413,
25398487-25398676
Length = 356
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 310 AVYAMFLTSFSVWNCTRCS*D 372
AVY LTS W C RC D
Sbjct: 60 AVYTSDLTSLFAWTCPRCQSD 80
>08_01_0489 + 4280063-4280476
Length = 137
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -3
Query: 402 AGLLLHPPAWISAAAGTVPNGERRQEHGV-HRPSSVQERRPRSG 274
A LL PP ++AAAGT G + + V RP+ PR G
Sbjct: 51 AVLLPQPPVMLAAAAGTPEQGNGPKINAVLRRPTPPGGAGPREG 94
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,098,300
Number of Sequences: 37544
Number of extensions: 297884
Number of successful extensions: 1015
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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