Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303A12f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23022| Best HMM Match : CUB (HMM E-Value=0)                         33   0.11 
SB_37663| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.25 
SB_4705| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.0  
SB_9299| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.8  
SB_3975| Best HMM Match : Sigma70_ECF (HMM E-Value=7.3)                29   1.8  
SB_51443| Best HMM Match : DRAT (HMM E-Value=2.3)                      29   3.1  
SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12)              28   4.1  
SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_25851| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 28   5.4  
SB_3353| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.4  
SB_50697| Best HMM Match : C2 (HMM E-Value=0.59)                       27   7.1  
SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_11339| Best HMM Match : TGF_beta (HMM E-Value=5.60519e-45)          27   9.4  

>SB_23022| Best HMM Match : CUB (HMM E-Value=0)
          Length = 1307

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -1

Query: 488  TENAENLKVEGINEKLEEAPKSDAEVVSSQGSYY 387
            T   +N +   + ++LEEA K+DA VV SQG  Y
Sbjct: 1077 TVTVQNAEERNVTQRLEEAVKNDAIVVESQGRQY 1110


>SB_37663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1735

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
 Frame = -1

Query: 503  DEETTTENAENLKVEGINEKLEEAPKSDAEVVSSQGSYYILLPGSQLQRVQFQTENDV-R 327
            DEE     A   + +  +  +EE+P S     S++G      P       + + EN V R
Sbjct: 838  DEEEEQSTAMAKRAKHFDVDVEESPASSTTETSNRGK-----PAQHQDNEEDEPENKVKR 892

Query: 326  NMAYTARLQYKNEDRAPV 273
            N    ARLQ   ED  PV
Sbjct: 893  NKGKPARLQDHEEDEEPV 910


>SB_4705| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 330 QEHGVHRPSSVQERRPRSGVCVHSSTAI 247
           Q HGV+RP +V+   P    C H+S A+
Sbjct: 31  QTHGVYRPRAVRPGDPLESTCRHASLAL 58


>SB_9299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1135

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +2

Query: 266 THTPERGLRSCTEDGRCTPCS*RRSPFGTVPAAAEIQAGGCSKS 397
           TH  E G RS +     +  S  +S F   PAA E+Q+GG + S
Sbjct: 160 THHGEGGNRSLSNVPAVSSTSTTKSSFEDEPAAEELQSGGSNDS 203


>SB_3975| Best HMM Match : Sigma70_ECF (HMM E-Value=7.3)
          Length = 355

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +2

Query: 266 THTPERGLRSCTEDGRCTPCS*RRSPFGTVPAAAEIQAGGCSKS 397
           TH  E G RS +     +  S  +S F   PAA E+Q+GG + S
Sbjct: 4   THHGEGGNRSLSNVPAVSSTSTTKSSFEDEPAAEELQSGGSNDS 47


>SB_51443| Best HMM Match : DRAT (HMM E-Value=2.3)
          Length = 259

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 343 RRTTSGTWRTPPVFSTRTKTALRC 272
           +RT SGT R   + ST TK A RC
Sbjct: 164 KRTASGTARVHTILSTDTKCAKRC 187


>SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12)
          Length = 1290

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = -3

Query: 390 LHPPAWISAAAGTVPNGERRQEHGVHRPSSVQERRP 283
           +HP  W   A+   P G + Q H +HR        P
Sbjct: 811 VHPIHWAQRASSFHPPGHKGQVHPIHRAQRASSSHP 846


>SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 791

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 2/90 (2%)
 Frame = -3

Query: 516 WCASRRRNYNRKRGKPQ--S*GYKRKTRGGSEK*RRSGEFAGLLLHPPAWISAAAGTVPN 343
           W    +R  + KR  P+  S  Y  ++R  S     S   +    H P+  S +  +  +
Sbjct: 176 WHDPWQRTTSPKRRSPRRSSSSYSSRSRSSSSSSSGSSHSSRSQSHTPSSGSGSRNSSRS 235

Query: 342 GERRQEHGVHRPSSVQERRPRSGVCVHSST 253
             R Q H V R  S    + RS    HS++
Sbjct: 236 ASRSQSHSVSRSRSKSLSQSRSRSQSHSAS 265


>SB_25851| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 683

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -2

Query: 499 KKLQPKTRK-TSKLRV*TKNSRRLRKVTPK 413
           +K  P+TRK T + R  T  SRR RK TP+
Sbjct: 528 RKNSPRTRKPTRRPRKNTHKSRRTRKTTPQ 557


>SB_3353| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -2

Query: 499 KKLQPKTRK-TSKLRV*TKNSRRLRKVTPK 413
           +K  P+TRK T + R  T  SRR RK TP+
Sbjct: 165 RKNSPRTRKPTRRPRKNTHKSRRTRKTTPQ 194


>SB_50697| Best HMM Match : C2 (HMM E-Value=0.59)
          Length = 437

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -1

Query: 278 PVYVYTAVPQYQPSAAYIQLY*TEGID 198
           P  +YTA+P  +P+   +++Y  +G+D
Sbjct: 219 PETIYTALPPSEPTDCLVRVYVVKGVD 245


>SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1103

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = -1

Query: 512 VPRDEETTTENAENLKVEGINEKLEEAPKSDAEVVSSQG 396
           V +DE   +E AE +K E I  K++E PK DAE    +G
Sbjct: 494 VKKDETKKSEKAE-IKKEEI--KVKEEPKDDAEKKEDEG 529


>SB_11339| Best HMM Match : TGF_beta (HMM E-Value=5.60519e-45)
          Length = 481

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/51 (23%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +3

Query: 348 ELYPLQLRSRQEDVVRALRTHHFGVTFRSLLEFFVYTLNFEV-FRVFGCSF 497
           ELY + +R+ ++  + ++R H F +  + L++   + L   + F +F C++
Sbjct: 410 ELYSMHMRANEDKTIDSIRLHAFAL--KRLMDNTTFELRLTIMFCLFYCNY 458


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,307,233
Number of Sequences: 59808
Number of extensions: 326126
Number of successful extensions: 1066
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)