Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303A12f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039048-12|AAB94241.2|  296|Caenorhabditis elegans Hypothetical...    31   0.50 
AF000265-9|AAB52943.2|  449|Caenorhabditis elegans Hypothetical ...    29   2.7  
Z69662-6|CAA93501.1|  283|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z66562-4|CAA91465.1|  258|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AF067944-5|AAC17673.1|  335|Caenorhabditis elegans Seven tm rece...    28   4.7  
U80454-5|AAB37877.1|  368|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AL032657-17|CAL44979.1|   49|Caenorhabditis elegans Hypothetical...    27   6.2  
Z82075-1|CAB04930.1|  320|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>AF039048-12|AAB94241.2|  296|Caenorhabditis elegans Hypothetical
           protein F16B4.10 protein.
          Length = 296

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +3

Query: 369 RSRQEDVVRALRTHHFGVTFRSLLEFFVYTLNFEVFRVFGCSFFVARHTIF 521
           R R++++V      H  V F   L +F+Y+     F ++G SFF++   +F
Sbjct: 31  RKRRKEIVLFYFRFHIDVLFG--LSYFLYSFFILGFTIYGSSFFISNSDLF 79


>AF000265-9|AAB52943.2|  449|Caenorhabditis elegans Hypothetical
           protein C18E3.2 protein.
          Length = 449

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = -3

Query: 492 YNRKRGKPQS*GYKRKTRGGSEK*RRSGEFAGL--LLHPPAWISAAAGTVPNGERRQEHG 319
           ++++R  PQ   +   T G + + RR G FAG    +H P  ++  A  +P  ++  +  
Sbjct: 2   HSQQRPNPQMNRHPYGTPGSAPQMRRPGGFAGQPPQMHGPRMVAPPAAPLPKKKKYADKC 61

Query: 318 VH 313
           +H
Sbjct: 62  IH 63


>Z69662-6|CAA93501.1|  283|Caenorhabditis elegans Hypothetical
           protein F56D5.10 protein.
          Length = 283

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
 Frame = +3

Query: 72  IRAYPRSHLILYKIIQPFSMKHQSVVFKFQTISLGVR-FEI*MIDSFSLIELDVSSRRLV 248
           I  Y   + ILY  ++ +    +++ F+ QTIS  +R   I  ++ F    L  S+R++V
Sbjct: 199 IGVYLSVYEILYLHMRLYPQHFENLPFELQTISYDLRLLAISSLNFFVYFVLTKSTRKIV 258

Query: 249 LR-YCCV-HIHRSAVF 290
           L+ +  V H+H S  F
Sbjct: 259 LKSFGSVNHLHLSQSF 274


>Z66562-4|CAA91465.1|  258|Caenorhabditis elegans Hypothetical
           protein F42E11.3 protein.
          Length = 258

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +3

Query: 390 VRALRTHHFGVTFRSLLEFFVYTLNFEVFRVFGCSFFVARHT 515
           +   R  H+      +  F  YT    +F V G +FF++ HT
Sbjct: 17  LNVFRKIHYLELLSQMFGFLFYTFYLIIFLVHGKTFFISEHT 58


>AF067944-5|AAC17673.1|  335|Caenorhabditis elegans Seven tm
           receptor protein 67 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
 Frame = +3

Query: 102 LYKIIQPFSMKHQSVVFKFQTISLGVRFEI*MI-----DSFSLIELDVSSRRLVLRYCCV 266
           L  I++PF+  +   +  F    L +  +I  I       F LI +   S + V RY CV
Sbjct: 57  LEMIMKPFTHNYNGALLSFNLCELNIPLKIRQIFILIWSQFYLIVISFISVQFVYRYLCV 116

Query: 267 HIHRSAVFVLVLKT 308
              +   +   LKT
Sbjct: 117 FNEQKTKYFDGLKT 130


>U80454-5|AAB37877.1|  368|Caenorhabditis elegans Hypothetical
           protein T16A1.8 protein.
          Length = 368

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 25/103 (24%), Positives = 43/103 (41%)
 Frame = +3

Query: 204 SFSLIELDVSSRRLVLRYCCVHIHRSAVFVLVLKTGGVRHVPDVVLRLELYPLQLRSRQE 383
           SF ++ L  S+ +  LR  C+  H   +F+ VL T   +H+                 Q+
Sbjct: 5   SFPILRLPQSALKNALRQMCLMEH---LFLSVLSTKAKQHIT-----------MFNEVQQ 50

Query: 384 DVVRALRTHHFGVTFRSLLEFFVYTLNFEVFRVFGCSFFVARH 512
           DV   +R+  F  T +S   ++   +NF++  V     F   H
Sbjct: 51  DVSLIVRSSEFIFTLQSKKNYYDLHINFKLSNVKISKLFFPGH 93


>AL032657-17|CAL44979.1|   49|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4d protein.
          Length = 49

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 358 GYSSKRRTTSGTWRTPPVFSTRTKTALRCMCTQQY 254
           G   K  T +   RTP   + RTK  LR +CT ++
Sbjct: 8   GSRVKTHTPTSHHRTPSPRTLRTKNVLRTICTPKF 42


>Z82075-1|CAB04930.1|  320|Caenorhabditis elegans Hypothetical
           protein W07A8.1 protein.
          Length = 320

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +3

Query: 72  IRAYPRSHLILYKIIQPFSMKHQSVVFKFQTISLGVR-FEI*MIDSFSLIELDVSSRRLV 248
           I AY   + ILY  I+ +     S  F+FQTI+  +R   +  ++      L  S+R +V
Sbjct: 238 IGAYLSIYEILYLQIRLYPESFNSAPFEFQTITYSLRLLAVGSLNFCVYFVLTKSTRAMV 297

Query: 249 LRY 257
           L++
Sbjct: 298 LKF 300


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,945,084
Number of Sequences: 27780
Number of extensions: 246029
Number of successful extensions: 875
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)