Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303A12f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72840.1 68414.m08425 disease resistance protein (TIR-NBS-LRR...    29   2.5  
At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S ...    28   3.3  
At4g38570.1 68417.m05460 CDP-diacylglycerol--inositol 3-phosphat...    27   7.7  
At2g45000.1 68415.m05603 expressed protein contains Pfam profile...    27   7.7  
At1g20693.1 68414.m02592 high mobility group protein beta1 (HMGb...    27   7.7  

>At1g72840.1 68414.m08425 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1183

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 25/107 (23%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
 Frame = -1

Query: 458  GINEKLEEAPKSDAEVVS--SQGSYYILLPGSQLQRVQFQT-ENDVRNMAYTARLQYKNE 288
            G NE LE + ++   +VS   + S++  L    L  ++F+     +R +++   L   N 
Sbjct: 913  GRNELLELSLENCKSLVSLSEELSHFTKLTYLDLSSLEFRRIPTSIRELSFMRTLYLNNC 972

Query: 287  DRAPVYVYTAVPQYQPSAAYIQLY*TEGIDHSNFKPHAKRNGLKFEY 147
            ++  ++  T +P+   S  Y+  +  E ++H NF  +   N L F +
Sbjct: 973  NK--IFSLTDLPE---SLKYLYAHGCESLEHVNFSSNHSFNHLDFSH 1014


>At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S
           ribosomal protein L18, Arabidopsis thaliana,
           SWISSPROT:RL18_ARATH
          Length = 187

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 206 GIDHSNFKPHAKRNGLKFE 150
           G+ HSN KP+ +  G KFE
Sbjct: 156 GVPHSNTKPYVRHKGRKFE 174


>At4g38570.1 68417.m05460 CDP-diacylglycerol--inositol
           3-phosphatidyltransferase, putative /
           phosphatidylinositol synthase, putative similar to
           phosphatidylinositol synthase (PIS1) - Arabidopsis
           thaliana, PID:e1313354 [gi:3367632]
          Length = 225

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/45 (26%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +3

Query: 240 RLVLRYCCVHIHRSAVFVLVLKTGGVRHVPDVVLR--LELYPLQL 368
           R+ + YCCV      + +L++ T    ++ +VV++  +++ PL L
Sbjct: 142 RMFMGYCCVSCEVLYIILLLIATNQTENLMNVVVKSLMQISPLSL 186


>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
           PF05064 Nsp1-like C-terminal region
          Length = 739

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/49 (34%), Positives = 20/49 (40%)
 Frame = +2

Query: 266 THTPERGLRSCTEDGRCTPCS*RRSPFGTVPAAAEIQAGGCSKSPANSP 412
           T TP   L         TP S   SPFG  PA+      G S S  ++P
Sbjct: 151 TATPSSSLFGAPASSAATPSS---SPFGAAPASGSTPLFGSSPSLFSAP 196


>At1g20693.1 68414.m02592 high mobility group protein beta1
           (HMGbeta1) / HMG protein beta1 nearly identical to HMG
           protein (HMGbeta1) [Arabidopsis thaliana] GI:2832359
          Length = 144

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 512 VPRDEETTTENAENLKVEGINEKLEEAPKSDAE 414
           V + E+   E  +N+K    N+KLEE PK D E
Sbjct: 89  VAKAEKRKVEYEKNIKA--YNKKLEEGPKEDEE 119


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,109,354
Number of Sequences: 28952
Number of extensions: 222907
Number of successful extensions: 677
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)