Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303A11f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.08c |||Mago-nashi homolog|Schizosaccharomyces pombe|chr ...   186   2e-48
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|...    27   1.3  
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc...    27   1.3  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    26   3.9  
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|...    25   5.2  
SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|c...    25   9.0  

>SPBC3B9.08c |||Mago-nashi homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 147

 Score =  186 bits (453), Expect = 2e-48
 Identities = 83/139 (59%), Positives = 105/139 (75%)
 Frame = -1

Query: 485 TDFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHPCVMDELKR 306
           +DFY+RYY GH G+FGHEFLEF++  DG  RYANNSNY+ND++IRKE +V   V+ E++R
Sbjct: 2   SDFYVRYYSGHHGRFGHEFLEFDYHSDGLARYANNSNYRNDSLIRKEMFVSELVLKEVQR 61

Query: 305 IIIDSEIMHEDDRLWPQPDRVGRQELEIVIGEEHISFTTSKTGSLVDVNQSRDPEGLRGF 126
           I+ DSEI+ E D  WP  ++ G+QELEI +  +HI F T K GSL DV  S DPEGL+ F
Sbjct: 62  IVDDSEIIKESDESWPPENKDGKQELEIRMNGKHIMFETCKLGSLADVQNSDDPEGLKVF 121

Query: 125 YYLVQDLKCLVFSLIGLHF 69
           YYL+QDLK L FSLI L+F
Sbjct: 122 YYLIQDLKALCFSLISLNF 140


>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 482

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 315 LVHYTRVNIGFFTYHCIVFIVRIIGITQFPVRPEFKFEKFVAK 443
           LVHY+    G+  Y  I  + ++I   Q PV+ E  F+K+ +K
Sbjct: 399 LVHYS----GYEEYQLISVVKKMINYLQKPVQHEAFFKKYASK 437


>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 381

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -1

Query: 464 YVGHKGKFGHEFLEFEFRPD-GKLRYANNSNYKNDTMIR 351
           +V  KG F H  LEF   PD G    ANN   +N  +++
Sbjct: 13  WVKSKGAFVHPSLEFSVIPDAGSCVLANNDINENTVLLK 51


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 19/76 (25%), Positives = 36/76 (47%)
 Frame = +3

Query: 276 FVHDFGINYDSF*LVHYTRVNIGFFTYHCIVFIVRIIGITQFPVRPEFKFEKFVAKLSLV 455
           ++H FG  Y+SF         + F+ +   V  +R  GIT   +      +  +  +  V
Sbjct: 442 YLHLFGSIYNSF-----REERVMFWIFPIAVQFMR--GITVGVIGSSGSAQLAIFFILEV 494

Query: 456 SNIISYVKIRRHFAQS 503
           +N+++Y  +R HF Q+
Sbjct: 495 ANVVAYAYVRPHFPQT 510


>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
           Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 278

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 397 SFPSGRNSNSRNSWPNFPLC 456
           SFP     NS   +PN P+C
Sbjct: 44  SFPKASKPNSNQPYPNGPVC 63


>SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 298

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 401 KLRYANNSNYKNDTMIRKEAYVHPCVMD 318
           K+ YA  S Y++  +   E Y H  V+D
Sbjct: 34  KVLYAGKSKYQDVLVFESETYGHVLVLD 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,023,522
Number of Sequences: 5004
Number of extensions: 39715
Number of successful extensions: 126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)