Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303A11f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1060 + 10958632-10958871,10959006-10959272                      223   9e-59
07_03_1773 - 29422660-29422806,29423103-29423201,29423811-294239...    27   9.1  
04_01_0278 + 3700974-3701672,3714653-3714841,3714954-3715814           27   9.1  

>12_01_1060 + 10958632-10958871,10959006-10959272
          Length = 168

 Score =  223 bits (544), Expect = 9e-59
 Identities = 102/126 (80%), Positives = 111/126 (88%)
 Frame = -1

Query: 482 DFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHPCVMDELKRI 303
           +FY+RYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKE +V P V+ E +RI
Sbjct: 16  EFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFVSPSVLREARRI 75

Query: 302 IIDSEIMHEDDRLWPQPDRVGRQELEIVIGEEHISFTTSKTGSLVDVNQSRDPEGLRGFY 123
           I +SEIM EDD  WP+PDRVGRQELEIV+G EHISFTTSK GSLVDV  S+DPEGLR FY
Sbjct: 76  IQESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQTSKDPEGLRIFY 135

Query: 122 YLVQDL 105
           YLVQ L
Sbjct: 136 YLVQVL 141


>07_03_1773 -
           29422660-29422806,29423103-29423201,29423811-29423915,
           29423990-29424136,29424436-29424954
          Length = 338

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -1

Query: 344 AYVHPCVMDELKRIIIDSEIMHEDDRLWPQPDRVGRQELEIVIGEEH 204
           AYV     + ++ +I+ SE+     R  P   +VGRQE  +V+  +H
Sbjct: 32  AYVSLLEYNNIEGMILYSELSRRRIRSIPSLIKVGRQEPAVVLRVDH 78


>04_01_0278 + 3700974-3701672,3714653-3714841,3714954-3715814
          Length = 582

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 11/80 (13%)
 Frame = -1

Query: 452 KGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMI--RKEAYVHPCVMDELKRIIIDSEIMH 279
           + K  H ++++E  P    R+  +++  ND ++  R  +  H C     KR I+DS I++
Sbjct: 173 RDKHQHFYIKYE-HP----RHLGDNHGSNDELLLHRAHSLFHVC-----KRGIVDSVIIN 222

Query: 278 EDD---------RLWPQPDR 246
           +DD         + WPQP+R
Sbjct: 223 DDDDSDNPDSKWQRWPQPNR 242


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,161,296
Number of Sequences: 37544
Number of extensions: 230051
Number of successful extensions: 513
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)