Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303A11f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_857| Best HMM Match : Mago_nashi (HMM E-Value=0)                   210   7e-55
SB_29231| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.082
SB_10219| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.11 
SB_23798| Best HMM Match : DAP_C (HMM E-Value=2)                       31   0.58 
SB_4180| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.3  
SB_39420| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_20482| Best HMM Match : p450 (HMM E-Value=4.6e-28)                  29   2.3  
SB_10221| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_22117| Best HMM Match : p450 (HMM E-Value=1.1e-09)                  28   4.1  
SB_19361| Best HMM Match : Ribosomal_S23p (HMM E-Value=9.8)            28   4.1  
SB_15627| Best HMM Match : AMPKBI (HMM E-Value=3e-36)                  27   7.1  
SB_42181| Best HMM Match : Pyr_redox_2 (HMM E-Value=0.00013)           27   7.1  

>SB_857| Best HMM Match : Mago_nashi (HMM E-Value=0)
          Length = 900

 Score =  210 bits (512), Expect = 7e-55
 Identities = 93/111 (83%), Positives = 101/111 (90%)
 Frame = -1

Query: 482 DFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHPCVMDELKRI 303
           DFY+RYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKE Y H  V++ELKRI
Sbjct: 6   DFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVYCHKAVIEELKRI 65

Query: 302 IIDSEIMHEDDRLWPQPDRVGRQELEIVIGEEHISFTTSKTGSLVDVNQSR 150
           I DSE+M EDD LWPQPDRVGRQELEIV G++HISFTTSK GSLVD+NQ +
Sbjct: 66  IDDSEVMKEDDALWPQPDRVGRQELEIVYGDQHISFTTSKIGSLVDINQCK 116


>SB_29231| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2271

 Score = 33.9 bits (74), Expect = 0.082
 Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
 Frame = -1

Query: 521  LEDKFKTLCKMSTDFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEA 342
            +++KF+ LCK+  D  I      + K    +      PD +   A  S Y+ND   RK+ 
Sbjct: 1585 IQNKFEELCKIIKDLQIHVMFISETKIDSSY------PDSQFSMAGYSLYRND---RKKG 1635

Query: 341  YVHPCVMDELK------RIIIDSEIMHEDDRLWPQPDRVGRQ 234
             +    +D LK      ++++DSE   +   L  QP RV ++
Sbjct: 1636 VLGDLNLDRLKPEKPEGKLLLDSEAEQDFKCLITQPTRVEKR 1677


>SB_10219| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 929

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -1

Query: 284  MHEDDRLWPQPDRVGRQELE-IVIGEEHISFTTSKTGSLVDVNQSRDPEGLRGFYYLVQD 108
            +H  D + PQ D++  Q  +  V+ ++H+ FT  +  +L  + Q       R F Y   +
Sbjct: 831  LHVTDPVQPQGDQIFMQHQQPSVLPQDHVIFTMLEADTLGCLTQCLGRTACRSFSYSPTE 890

Query: 107  LKCLVFS 87
              C++FS
Sbjct: 891  AMCILFS 897


>SB_23798| Best HMM Match : DAP_C (HMM E-Value=2)
          Length = 344

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
 Frame = -1

Query: 305 IIIDSEIMHEDDRLWPQPDRVG--RQELEIVIGEEHISFTTSKTGSLVDVNQSRDPEGLR 132
           I ID+  MH D   W  P+R    R    I  G + + ++      L+ V++     G +
Sbjct: 25  IFIDAYSMHHDPEFWTDPERFDPERFSRSITHGAQRLYYSRCAKALLLTVHKGSITHGAQ 84

Query: 131 GFYY 120
             YY
Sbjct: 85  RLYY 88


>SB_4180| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 352

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = -1

Query: 224 IVIGEEHISFTTSKTGSLVDVNQSRDPEGLRGFYYLVQDLKCL 96
           ++IG    + T SK   L   N+   P G + F YLVQ  KCL
Sbjct: 30  VLIGPGTTTSTRSKEPKLEHNNRIHLPSGKKLFVYLVQTEKCL 72


>SB_39420| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 993

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 389 ANNSNYKNDTMIRKEAYVHPCVMDELKRIIIDS 291
           A  ++ +N T ++   Y+HP   D+LKRI++ S
Sbjct: 2   ALRNSSQNVTQLQNATYIHPRGTDDLKRIVLIS 34


>SB_20482| Best HMM Match : p450 (HMM E-Value=4.6e-28)
          Length = 473

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 305 IIIDSEIMHEDDRLWPQPDR 246
           II+D   +H D  LWP+P+R
Sbjct: 446 IIMDIYSLHHDPELWPEPER 465


>SB_10221| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 766

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/67 (22%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -1

Query: 284 MHEDDRLWPQPDRVG-RQELEIVIGEEHISFTTSKTGSLVDVNQSRDPEGLRGFYYLVQD 108
           +H  + + PQ D++  + +   V+ ++H+ +T  +  +L  + Q       R F Y   +
Sbjct: 668 LHVTNPVQPQGDQIFMKHQQPSVLPQDHVIYTMLEADTLDCLTQCLGRTACRSFSYSPTE 727

Query: 107 LKCLVFS 87
             C++FS
Sbjct: 728 AMCILFS 734


>SB_22117| Best HMM Match : p450 (HMM E-Value=1.1e-09)
          Length = 307

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 305 IIIDSEIMHEDDRLWPQPDR 246
           I++D   +H D  LWP+P+R
Sbjct: 204 ILMDVYSLHHDPELWPEPER 223


>SB_19361| Best HMM Match : Ribosomal_S23p (HMM E-Value=9.8)
          Length = 126

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 305 IIIDSEIMHEDDRLWPQPDR 246
           I++D   +H D  LWP+P+R
Sbjct: 25  ILMDVYSLHHDPELWPEPER 44


>SB_15627| Best HMM Match : AMPKBI (HMM E-Value=3e-36)
          Length = 255

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -1

Query: 344 AYVHPCVMDELKRIIIDSEIM-HEDDRLWPQPDRVGRQEL 228
           A V P +   L  +I++ +I+ H+D  L P+PD V    L
Sbjct: 182 ASVPPILPPHLLHVILNKDIVDHDDPSLLPEPDYVSLNHL 221


>SB_42181| Best HMM Match : Pyr_redox_2 (HMM E-Value=0.00013)
          Length = 201

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 257 QPDRVGRQELEIVIGEEHI 201
           +PD  GR+  EIV G EHI
Sbjct: 100 EPDAKGRRRAEIVAGSEHI 118


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,529,439
Number of Sequences: 59808
Number of extensions: 279215
Number of successful extensions: 631
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)