Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303A11f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81108-3|CAB03239.1|  152|Caenorhabditis elegans Hypothetical pr...   244   3e-65
AF007861-1|AAB66721.1|  147|Caenorhabditis elegans ce-Mago protein.   242   9e-65
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical...    30   0.87 
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha...    28   3.5  
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha...    28   3.5  
Z81463-8|CAB03849.2|  346|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AF038604-2|AAB92013.1|  468|Caenorhabditis elegans Hypothetical ...    27   6.2  

>Z81108-3|CAB03239.1|  152|Caenorhabditis elegans Hypothetical
           protein R09B3.5 protein.
          Length = 152

 Score =  244 bits (597), Expect = 3e-65
 Identities = 110/140 (78%), Positives = 121/140 (86%)
 Frame = -1

Query: 488 STDFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHPCVMDELK 309
           + DFY+RYYVGHKGKFGHEFLEFEFRP+G LRYANNSNYKNDTMIRKEA V   V+ ELK
Sbjct: 8   AADFYVRYYVGHKGKFGHEFLEFEFRPNGSLRYANNSNYKNDTMIRKEATVSESVLSELK 67

Query: 308 RIIIDSEIMHEDDRLWPQPDRVGRQELEIVIGEEHISFTTSKTGSLVDVNQSRDPEGLRG 129
           RII DSEIM EDD  WP+PD++GRQELEI+   EHISFTT K G+L DVN S+DP+GLR 
Sbjct: 68  RIIEDSEIMQEDDDNWPEPDKIGRQELEILYKNEHISFTTGKIGALADVNNSKDPDGLRS 127

Query: 128 FYYLVQDLKCLVFSLIGLHF 69
           FYYLVQDLKCLVFSLIGLHF
Sbjct: 128 FYYLVQDLKCLVFSLIGLHF 147


>AF007861-1|AAB66721.1|  147|Caenorhabditis elegans ce-Mago protein.
          Length = 147

 Score =  242 bits (593), Expect = 9e-65
 Identities = 109/140 (77%), Positives = 120/140 (85%)
 Frame = -1

Query: 488 STDFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHPCVMDELK 309
           + DFY+RYYVGHKGKFGHEFLEFEFRP+G LRY NNSNYKNDTMIRKEA V   V+ ELK
Sbjct: 3   AADFYVRYYVGHKGKFGHEFLEFEFRPNGSLRYGNNSNYKNDTMIRKEATVSESVLSELK 62

Query: 308 RIIIDSEIMHEDDRLWPQPDRVGRQELEIVIGEEHISFTTSKTGSLVDVNQSRDPEGLRG 129
           RII DSEIM EDD  WP+PD++GRQELEI+   EHISFTT K G+L DVN S+DP+GLR 
Sbjct: 63  RIIEDSEIMQEDDDNWPEPDKIGRQELEILYKNEHISFTTGKIGALADVNNSKDPDGLRS 122

Query: 128 FYYLVQDLKCLVFSLIGLHF 69
           FYYLVQDLKCLVFSLIGLHF
Sbjct: 123 FYYLVQDLKCLVFSLIGLHF 142


>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
           protein Y43F8B.3a protein.
          Length = 1816

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 167 DVNQSRDPEGLRGFYYLVQDLKCLVFSLIGL 75
           ++ Q   P  L  FYY     KCL F+ +GL
Sbjct: 477 EMTQGEGPSALTRFYYDASQRKCLAFNYLGL 507


>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical
           protein K08C7.3b protein.
          Length = 3672

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -1

Query: 194 TTSKTGSLVDVNQSRDPEGLRGFYYLVQDL 105
           T +  G L+D+N+ RDP   R ++Y ++++
Sbjct: 263 TRTLQGHLMDMNEWRDPTVTRRYFYAIKEI 292


>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical
           protein K08C7.3a protein.
          Length = 3704

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -1

Query: 194 TTSKTGSLVDVNQSRDPEGLRGFYYLVQDL 105
           T +  G L+D+N+ RDP   R ++Y ++++
Sbjct: 263 TRTLQGHLMDMNEWRDPTVTRRYFYAIKEI 292


>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
           chain protein.
          Length = 3704

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -1

Query: 194 TTSKTGSLVDVNQSRDPEGLRGFYYLVQDL 105
           T +  G L+D+N+ RDP   R ++Y ++++
Sbjct: 263 TRTLQGHLMDMNEWRDPTVTRRYFYAIKEI 292


>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
           protein.
          Length = 3704

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -1

Query: 194 TTSKTGSLVDVNQSRDPEGLRGFYYLVQDL 105
           T +  G L+D+N+ RDP   R ++Y ++++
Sbjct: 263 TRTLQGHLMDMNEWRDPTVTRRYFYAIKEI 292


>Z81463-8|CAB03849.2|  346|Caenorhabditis elegans Hypothetical
           protein C06B8.6 protein.
          Length = 346

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 138 SSWVLLFSSRP*MSSILFNWATF 70
           S WV++F + P MSS+ F+  TF
Sbjct: 43  SGWVIVFKTPPSMSSVKFSLLTF 65


>AF038604-2|AAB92013.1|  468|Caenorhabditis elegans Hypothetical
           protein B0546.3 protein.
          Length = 468

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 266 LWPQPDRVGRQELEIVIGEEH 204
           L+PQP  V  + LE +IGEEH
Sbjct: 285 LFPQPGFVQFENLEHIIGEEH 305


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,956,017
Number of Sequences: 27780
Number of extensions: 216647
Number of successful extensions: 559
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)