Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303A11f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   2.5  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   2.5  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   2.5  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   2.5  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   2.5  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              21   5.8  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   7.7  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 446 KFGHEFLEFEFRPDGKLRYANNSNYK 369
           K+  EFL  +   D +LRY+N S Y+
Sbjct: 106 KYEVEFLLQQQWYDPRLRYSNRSQYE 131


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 446 KFGHEFLEFEFRPDGKLRYANNSNYK 369
           K+  EFL  +   D +LRY+N S Y+
Sbjct: 106 KYEVEFLLQQQWYDPRLRYSNRSQYE 131


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 446 KFGHEFLEFEFRPDGKLRYANNSNYK 369
           K+  EFL  +   D +LRY+N S Y+
Sbjct: 157 KYEVEFLLQQQWYDPRLRYSNRSQYE 182


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 446 KFGHEFLEFEFRPDGKLRYANNSNYK 369
           K+  EFL  +   D +LRY+N S Y+
Sbjct: 106 KYEVEFLLQQQWYDPRLRYSNRSQYE 131


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -1

Query: 326 VMDELKRIIIDSEIMHEDDRLWPQPDRVGRQELEIVI 216
           +M+++    I+ + +HE D L     RVG +   I++
Sbjct: 39  LMEQILLAKIEKQNLHESDDLHESDGRVGGKRRNILL 75


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 61  LILKCSPIKENTRHLR 108
           LI++CSPI +   H++
Sbjct: 100 LIVECSPISDANVHIK 115


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 389 ANNSNYKNDTMIRKEAY 339
           +N SNY ND    K+ Y
Sbjct: 91  SNISNYNNDNNYNKKLY 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,057
Number of Sequences: 438
Number of extensions: 2931
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)