Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303A11f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g02140.1 68414.m00140 mago nashi family protein similar to Ma...   241   2e-64
At5g37470.1 68418.m04509 hypothetical protein contains Pfam PF04...    31   0.36 
At1g59453.1 68414.m06679 transcription factor-related weak simil...    29   1.9  
At1g59077.1 68414.m06670 hypothetical protein                          29   1.9  
At1g58766.1 68414.m06659 hypothetical protein                          29   1.9  
At3g14090.1 68416.m01781 exocyst subunit EXO70 family protein  c...    28   3.3  
At1g24540.1 68414.m03089 cytochrome P450, putative similar to GB...    28   3.3  
At1g12120.1 68414.m01404 expressed protein contains Pfam domain ...    28   3.3  
At1g79190.1 68414.m09233 expressed protein                             28   4.4  
At3g13250.1 68416.m01668 hypothetical protein low similarity to ...    27   5.8  
At4g30060.1 68417.m04276 expressed protein contains Pfam profile...    27   7.7  

>At1g02140.1 68414.m00140 mago nashi family protein similar to Mago
           Nashi, Genbank Accession Number U03559; contains Pfam
           PF02792: Mago nashi protein domain
          Length = 150

 Score =  241 bits (590), Expect = 2e-64
 Identities = 108/140 (77%), Positives = 121/140 (86%)
 Frame = -1

Query: 488 STDFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHPCVMDELK 309
           +T+FY+RYYVGHKGKFGHEFLEFEFR DGKLRYANNSNYKNDT+IRKE ++ P V+ E K
Sbjct: 6   ATEFYLRYYVGHKGKFGHEFLEFEFREDGKLRYANNSNYKNDTIIRKEVFLTPAVLKECK 65

Query: 308 RIIIDSEIMHEDDRLWPQPDRVGRQELEIVIGEEHISFTTSKTGSLVDVNQSRDPEGLRG 129
           RI+ +SEI+ EDD  WP+PDRVG+QELEIV+G EHISF TSK GSLVD   S DPEGLR 
Sbjct: 66  RIVSESEILKEDDNNWPEPDRVGKQELEIVLGNEHISFATSKIGSLVDCQSSNDPEGLRI 125

Query: 128 FYYLVQDLKCLVFSLIGLHF 69
           FYYLVQDLKCLVFSLI LHF
Sbjct: 126 FYYLVQDLKCLVFSLISLHF 145


>At5g37470.1 68418.m04509 hypothetical protein contains Pfam PF04510
           : Family of unknown function (DUF577)); common family
           comprised of  At5g37410, At5g37400, At5g37920,
           At5g37460, At5g37650, At5g37470, At5g37420, At5g37430
          Length = 629

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +3

Query: 387 GITQFPVRPEFKFEKFVAKLSLVSNIISYVKIRRHFAQSFKF 512
           G+ QF V+     EKFV +     N+ +Y K++RHF  +F F
Sbjct: 244 GMEQFLVQGLKHLEKFVLR---DKNLYNYTKVQRHFVMTFMF 282


>At1g59453.1 68414.m06679 transcription factor-related weak similarity
            to TFIIIC Box B-binding subunit [Homo sapiens] GI:442362
          Length = 1729

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 514  INLKLCAKCLRIFTYDIMLDTRESLATNFSNLNSGLTG 401
            +N + C K L + T D  +  RE + T FS   S LTG
Sbjct: 1665 LNPQSCRKLLELMTLDGYMKVREMVQTKFSGPPSLLTG 1702


>At1g59077.1 68414.m06670 hypothetical protein
          Length = 665

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 514 INLKLCAKCLRIFTYDIMLDTRESLATNFSNLNSGLTG 401
           +N + C K L + T D  +  RE + T FS   S LTG
Sbjct: 601 LNPQSCRKLLELMTLDGYMKVREMVQTKFSGPPSLLTG 638


>At1g58766.1 68414.m06659 hypothetical protein
          Length = 665

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 514 INLKLCAKCLRIFTYDIMLDTRESLATNFSNLNSGLTG 401
           +N + C K L + T D  +  RE + T FS   S LTG
Sbjct: 601 LNPQSCRKLLELMTLDGYMKVREMVQTKFSGPPSLLTG 638


>At3g14090.1 68416.m01781 exocyst subunit EXO70 family protein
           contains Pfam domain PF03081: Exo70 exocyst complex
           subunit;
          Length = 623

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
 Frame = -1

Query: 290 EIMHEDDRLWPQPDRVGRQELEIVIGEEHISFTTSKTGSL-VDVNQSRDPEGLRGFYYLV 114
           E +H     W  PD   R+EL I + E  I    S  G     +   R PE      Y V
Sbjct: 543 EEVHRTQSTWSVPDAQLREELRISLSEHLIPAYRSFLGRFRGHIESGRHPENY--LKYSV 600

Query: 113 QDLKCLV 93
           +D++ +V
Sbjct: 601 EDIETIV 607


>At1g24540.1 68414.m03089 cytochrome P450, putative similar to
           GB:AAB87111, similar to ESTs dbj|D41610, gb|T20562 and
           emb|Z26058
          Length = 522

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -1

Query: 308 RIIIDSEIMHEDDRLWPQPDRVGRQELEIVIGEEHISFTTSKTGSLVD 165
           R +++  I + DD LW +  RV + E+      EH +FTT +   LVD
Sbjct: 120 RDLLEDGIFNADDELWKEERRVAKTEMHSSRFLEH-TFTTMR--DLVD 164


>At1g12120.1 68414.m01404 expressed protein contains Pfam domain
           PF05904: Plant protein of unknown function (DUF863)
          Length = 483

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -1

Query: 212 EEHISFTTSKTGSLVDVNQSRDPEGL-RGFYYLVQDLKC 99
           E+    TTSK  SL+D+N +   E +    Y L+QDL C
Sbjct: 174 EDDSDKTTSKESSLLDLNSTPVDESVSEPRYSLLQDLNC 212


>At1g79190.1 68414.m09233 expressed protein
          Length = 1274

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
 Frame = -1

Query: 383  NSNYKNDTMIRKEAYV--HPCVMDELKRIIIDSEIMHEDDRLWPQPDRVGRQELEIVIGE 210
            N++Y  D++ R+  ++  +P V + L  ++    + H+   L  +P R+  QELEIV  +
Sbjct: 807  NADYVIDSICRQLRHLDLNPHVPNVLAAMLSYIGVAHDILPLLEEPMRLVSQELEIVGRQ 866

Query: 209  EHISFT 192
            +H + T
Sbjct: 867  QHPNLT 872


>At3g13250.1 68416.m01668 hypothetical protein low similarity to
           SP|P07271 DNA repair and recombination protein PIF1,
           mitochondrial precursor {Saccharomyces cerevisiae}
          Length = 1419

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = -1

Query: 374 YKNDTMIRKEAYVHPCVMDELKRIIIDSEIMHEDDRLWPQPDRVG 240
           +KN  +   EA +    + E+++I++ +    ED   +P+P R G
Sbjct: 865 FKNQELTLTEAQIQNYTLQEIEKIMLFNGATLEDIEHFPKPSREG 909


>At4g30060.1 68417.m04276 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 401

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 470 RYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMI 354
           R+++GH+GKF       + RP    RY  N   ++D ++
Sbjct: 128 RFFLGHEGKFSVYIHASKERPVHYSRYFLNREIRSDEVV 166


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,299,035
Number of Sequences: 28952
Number of extensions: 200206
Number of successful extensions: 520
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)