Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303A10f
(424 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000263-14|AAG00017.2| 130|Caenorhabditis elegans Ribosomal pr... 139 9e-34
AC006605-8|AAK85439.2| 741|Caenorhabditis elegans Ligase protei... 31 0.45
AC006648-9|AAF39858.2| 306|Caenorhabditis elegans Btb and math ... 29 1.8
AF225921-1|AAF36687.1| 335|Caenorhabditis elegans secretory car... 28 2.4
AF106577-10|AAC78189.1| 796|Caenorhabditis elegans Hypothetical... 28 2.4
AF003739-8|AAK84628.1| 335|Caenorhabditis elegans Scamp (synapt... 28 2.4
U00052-7|AAK21422.2| 232|Caenorhabditis elegans Fatty acid/reti... 28 3.2
Z81139-7|CAI46624.1| 358|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z35637-3|CAA84689.1| 244|Caenorhabditis elegans Hypothetical pr... 27 7.3
AF040645-4|AAB94974.1| 306|Caenorhabditis elegans Hypothetical ... 26 9.7
>AF000263-14|AAG00017.2| 130|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 17 protein.
Length = 130
Score = 139 bits (336), Expect = 9e-34
Identities = 66/99 (66%), Positives = 78/99 (78%), Gaps = 3/99 (3%)
Frame = +3
Query: 57 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 236
IEKYYTR+T DF NKR+C+E+AII +KPLRNKIAG+ THLMRR+ VRGISIKLQEE
Sbjct: 17 IEKYYTRMTNDFHNNKRVCDEVAIIGSKPLRNKIAGYITHLMRRIERGPVRGISIKLQEE 76
Query: 237 ERERRDNYVPEVSALEHD---IIEVDPDTKDMLKMLDFN 344
ERERRDNY+PE+S ++ I+VD DT DMLK FN
Sbjct: 77 ERERRDNYMPEISTVDPSQLTSIKVDTDTSDMLKAAGFN 115
>AC006605-8|AAK85439.2| 741|Caenorhabditis elegans Ligase protein 4
protein.
Length = 741
Score = 30.7 bits (66), Expect = 0.45
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +1
Query: 139 SLLGIKLLDLPHI**GVSDT--RKCEESLSNFRKRSVRGVTTMSQKCL 276
SL GI++ L G S+T RKCEE L +F V+G+T ++ C+
Sbjct: 641 SLTGIEVAVLQ----GTSETIRRKCEEILKHFDATVVKGITPSTKLCI 684
>AC006648-9|AAF39858.2| 306|Caenorhabditis elegans Btb and math
domain containingprotein 3 protein.
Length = 306
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +1
Query: 157 LLDLPHI**GVSDTRKCEESLSNFRKRSVRGVTTMSQKCLLSNMTSS 297
+L L H+ TRKCEE L +F ++ ++ +++K L N+ S
Sbjct: 222 ILHLAHMYDMPFPTRKCEEFLIDFSEKPIKEKLKVAKKYQLENLKKS 268
>AF225921-1|AAF36687.1| 335|Caenorhabditis elegans secretory
carrier membrane protein protein.
Length = 335
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 135 TKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERR 251
T L NK AG L R+ + + R ++++EEE +RR
Sbjct: 57 TGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95
>AF106577-10|AAC78189.1| 796|Caenorhabditis elegans Hypothetical
protein F46F5.11 protein.
Length = 796
Score = 28.3 bits (60), Expect = 2.4
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Frame = +3
Query: 207 RGISIKLQEEERERRDN----YVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQL 365
RG ++ E+ + R D+ Y + +A++ ++ DPD + ++L ++ NGL L
Sbjct: 187 RGFPLEHIEKHKNRNDSQVLCYEMKRAAVQQGLVHHDPDVDAIYRLLHADSKNGLNL 243
>AF003739-8|AAK84628.1| 335|Caenorhabditis elegans Scamp (synaptic
vesicle protein)homolog protein 1 protein.
Length = 335
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 135 TKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERR 251
T L NK AG L R+ + + R ++++EEE +RR
Sbjct: 57 TGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95
>U00052-7|AAK21422.2| 232|Caenorhabditis elegans Fatty acid/retinol
binding proteinprotein 8 protein.
Length = 232
Score = 27.9 bits (59), Expect = 3.2
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +2
Query: 161 WICHTFNEASQTLASARNLYQTSGRGA 241
W CH FN A ++ A+ L Q A
Sbjct: 150 WACHIFNNAKSAVSGAKALLQDDSEAA 176
>Z81139-7|CAI46624.1| 358|Caenorhabditis elegans Hypothetical
protein W05H5.5 protein.
Length = 358
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +3
Query: 312 TKDMLKMLDFNNINGLQL 365
T D+ KML+ NN+NGL+L
Sbjct: 107 TDDIGKMLNVNNLNGLEL 124
>Z35637-3|CAA84689.1| 244|Caenorhabditis elegans Hypothetical
protein C03C10.4 protein.
Length = 244
Score = 26.6 bits (56), Expect = 7.3
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +3
Query: 177 LMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALE 284
++ R +SQ+ +SI L+ E +ER+D+Y + ALE
Sbjct: 183 VLTRTMNSQLELMSI-LEHEVQERKDSYSDSMRALE 217
>AF040645-4|AAB94974.1| 306|Caenorhabditis elegans Hypothetical
protein F52C6.8 protein.
Length = 306
Score = 26.2 bits (55), Expect = 9.7
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +1
Query: 157 LLDLPHI**GVSDTRKCEESLSNFRKRSVRGVTTMSQKCLLSNMTSS 297
+L L H+ TRKCEE L +F ++ ++ +++K L ++ S
Sbjct: 222 ILHLAHMYDMPFPTRKCEEFLIDFSEKPIKEKLKVAKKYQLEDLKMS 268
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,753,405
Number of Sequences: 27780
Number of extensions: 163541
Number of successful extensions: 507
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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