Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303A09f
         (504 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   1.2  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   1.2  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   8.3  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   8.3  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   8.3  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   8.3  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 166 IESIPELPSGLIGYD*TGRAV 104
           ++ +PE+P GL   D +GR+V
Sbjct: 892 VQEVPEVPYGLKVLDKSGRSV 912


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +3

Query: 192 NAALPWCSSSRTGLRAKTSPSCFRRASMISCELSHSPSTP 311
           NAA    ++ ++     TSPS F RAS +S  +S S S P
Sbjct: 150 NAAAVAAAAQQSHRLMMTSPSGFNRAS-VSPLISSSSSPP 188


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 308 CTRRVGELA*DHRSAPEAARRSL 240
           C RR      D R+A +AARR +
Sbjct: 120 CPRREWSSPPDARAASDAARRGV 142


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 308 CTRRVGELA*DHRSAPEAARRSL 240
           C RR      D R+A +AARR +
Sbjct: 276 CPRREWSSPPDARAASDAARRGV 298


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 324 N*TWPRACPSALCDPTSD 377
           N  W R+ P+  C P SD
Sbjct: 210 NVQWVRSIPAFTCLPLSD 227


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 324 N*TWPRACPSALCDPTSD 377
           N  W R+ P+  C P SD
Sbjct: 210 NVQWVRSIPAFTCLPLSD 227


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,744
Number of Sequences: 336
Number of extensions: 1450
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11944578
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)