Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303A09f
         (504 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    26   2.8  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    25   4.9  
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    25   4.9  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    25   8.5  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    25   8.5  

>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
 Frame = -3

Query: 382 LGSEVGSHKALG--QARGQVQFPVARGVLGEWESSHEIIEARRKQLGE 245
           L SE  SH  LG  QAR   Q P      GE E   E  E +  +  E
Sbjct: 59  LSSEASSHSTLGQQQARDGRQSPSKEAPFGEGELKLENFENQENEADE 106


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 235 RRPVLELEHHGSAAFVSQPLDGEIESI-PELPS 140
           RRP L  +HHG    +S PL+ +  S+ P  PS
Sbjct: 247 RRPSLNTDHHGRPILLS-PLNYQNSSLNPSTPS 278


>SPBC2G2.08 |ade9||C-1-
            tetrahydrofolatesynthase/methylenetetrahydrofolatedehydro
            genase/methylenetetrahydrofolatecyclohydrolase/formyltetr
            ahydrofolatesynthetase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 969

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 229  PVLELEHHGSAAFVSQPLDGEIESIPELPS 140
            P+ ++  +  A F+  PL  EI++IP LP+
Sbjct: 922  PIRDMRLNAGAGFI-YPLAAEIQTIPGLPT 950


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -3

Query: 280  EIIEARRKQLGEVFARRPVLELEHHGSAAFVSQPLDGE 167
            E+I+ARRK+   V   +PV+E+ +  + AF  +  + E
Sbjct: 1430 ELIKARRKRALPVVPSKPVVEVFNDLNEAFDDENSEDE 1467


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 178 LDGEIESIPELPSGL 134
           LDG I++IPE+P  L
Sbjct: 661 LDGSIQAIPEIPQDL 675


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,509,868
Number of Sequences: 5004
Number of extensions: 25632
Number of successful extensions: 70
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)