Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303A09f
(504 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0161 + 17838466-17838551,17842379-17842445,17842537-178426... 77 6e-15
02_05_1312 + 35642687-35642923,35643712-35643831,35644468-356445... 77 6e-15
02_01_0073 - 509377-509425,510200-510270,510420-510539,510684-51... 77 8e-15
09_03_0218 + 13539481-13540082,13540171-13540276,13540645-135409... 69 2e-12
03_02_0981 + 12917195-12917572,12917661-12917818,12918732-129187... 49 2e-06
12_02_1218 - 27088206-27088214,27088577-27088643,27088755-270888... 31 0.40
05_07_0063 - 27428056-27428184,27428321-27428460,27428698-274289... 31 0.69
08_02_1177 + 24946763-24947275 30 1.2
09_04_0225 - 15855544-15855727,15855796-15856406 29 2.8
04_04_1049 + 30414545-30414596,30414732-30414853,30415121-304151... 29 2.8
11_06_0300 + 22095396-22096145,22096261-22096344,22097062-220973... 28 3.7
09_04_0568 + 18591757-18592251 28 3.7
02_02_0125 - 7026037-7027377 27 6.5
>03_04_0161 +
17838466-17838551,17842379-17842445,17842537-17842662,
17842756-17842886,17843121-17843220,17843334-17843466,
17843500-17843544,17843545-17843608,17843692-17844469,
17844897-17845229,17845427-17845634,17845733-17845809,
17846168-17846240,17846343-17846413,17846597-17846716,
17846815-17846879,17846974-17847124
Length = 875
Score = 77.4 bits (182), Expect = 6e-15
Identities = 42/96 (43%), Positives = 53/96 (55%), Gaps = 7/96 (7%)
Frame = +2
Query: 203 PMVLKLKDWPPGEDFAELLPARFDDLMRALPLSEYTS-RNGKLNLAARLPECFVRPDLGP 379
P +LKLKDWPP F + LP + + ALP EYT R G LNLA RLP ++PDLGP
Sbjct: 534 PEMLKLKDWPPSSMFDQRLPRHGAEFITALPFPEYTDPRYGPLNLAVRLPAGVLKPDLGP 593
Query: 380 K------MXXXXXXXXXXXNLHLDVSDAVNVMVHAS 469
K LH D+SDAVN+++H +
Sbjct: 594 KTYIAYGCYEELGRGDSVTKLHCDMSDAVNILMHTA 629
>02_05_1312 +
35642687-35642923,35643712-35643831,35644468-35644534,
35644673-35644694,35645053-35645152,35645282-35645414,
35645483-35645517,35645708-35646409,35646789-35647121,
35647337-35647601,35647665-35647999,35648105-35648177,
35648271-35648356,35648479-35648598,35648674-35648741,
35648825-35648882
Length = 917
Score = 77.4 bits (182), Expect = 6e-15
Identities = 43/101 (42%), Positives = 54/101 (53%), Gaps = 8/101 (7%)
Frame = +2
Query: 203 PMVLKLKDWPPGEDFAELLPARFDDLMRALPLSEYTS-RNGKLNLAARLPECFVRPDLGP 379
P +LKLKDWPP F + LP + + ALP EYT R G LNLA +LP ++PDLGP
Sbjct: 496 PEMLKLKDWPPSSSFDQRLPRHGAEFISALPFPEYTDPRYGPLNLAVKLPGGVLKPDLGP 555
Query: 380 K------MXXXXXXXXXXXNLHLDVSDAVNVMVH-ASAPAD 481
K LH D+SDAVN++ H A P +
Sbjct: 556 KTYIAYGFSEELGRGDSVTKLHCDMSDAVNILTHTAEVPCE 596
>02_01_0073 -
509377-509425,510200-510270,510420-510539,510684-510769,
510843-510915,510996-511718,513752-514081,514124-514210,
514494-515250,515336-515399,515477-515609,515702-515801,
515952-516088,516195-516341,516428-516478,517083-517148
Length = 997
Score = 77.0 bits (181), Expect = 8e-15
Identities = 40/94 (42%), Positives = 54/94 (57%), Gaps = 7/94 (7%)
Frame = +2
Query: 203 PMVLKLKDWPPGEDFAELLPARFDDLMRALPLSEYTS-RNGKLNLAARLPECFVRPDLGP 379
P++LKLKDWP F E LP + M ALP EYT ++G LNLA +LP+ +PDLGP
Sbjct: 537 PVLLKLKDWPQHSSFEERLPRHGAEFMSALPFREYTDPKSGPLNLAVKLPKHVKKPDLGP 596
Query: 380 K------MXXXXXXXXXXXNLHLDVSDAVNVMVH 463
K + +H D+SDAVN+++H
Sbjct: 597 KTYIAYGVAQELGIGDSVTKIHCDMSDAVNILMH 630
>09_03_0218 +
13539481-13540082,13540171-13540276,13540645-13540960,
13541187-13541263,13541269-13541895,13542783-13543112,
13543442-13543747,13543824-13543896,13544004-13544089,
13544219-13544396,13545311-13545756
Length = 1048
Score = 68.9 bits (161), Expect = 2e-12
Identities = 40/103 (38%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Frame = +2
Query: 203 PMVLKLKDWPPGEDFAELLPARFDDLMRALPLSEYTS-RNGKLNLAARLPECFVRPDLGP 379
P +LKLKDWP F ELLP+ M +LP YT+ ++G LN++ LP+ ++ D+GP
Sbjct: 599 PEMLKLKDWPTSNHFEELLPSHGVKYMNSLPFQPYTNLKSGLLNVSTLLPDDILKLDMGP 658
Query: 380 K------MXXXXXXXXXXXNLHLDVSDAVNVMVHASAPADAPE 490
K LH D+SDAVNV++H +A D E
Sbjct: 659 KSYIAYGYAQELGRGDSVTKLHCDLSDAVNVLMH-TAEVDPSE 700
>03_02_0981 +
12917195-12917572,12917661-12917818,12918732-12918765,
12918942-12919074,12919167-12919221,12919281-12920064,
12920440-12920769,12920788-12920895,12921259-12921678,
12921775-12921847,12922291-12922376,12922873-12922992,
12923086-12923156,12923350-12923449
Length = 949
Score = 49.2 bits (112), Expect = 2e-06
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Frame = +2
Query: 83 DTRVDLVNCASGLVVPNQPARKFWDGFDLAVKRLRDERGAPMVLKLKDWPPGEDFAELLP 262
D V V+C++ V + ++F G+ K E G M+LKLK+WPP E L
Sbjct: 501 DVIVKAVDCSNQAEVDIE-LKQFIKGYSDGHK---GEDGELMMLKLKEWPPPSVLEEFLL 556
Query: 263 ARFDDLMRALPLSEYT-SRNGKLNLAARLPECFVRPDLGPKM 385
+ + + PL ++ SR G LNL+A+LP ++P++G K+
Sbjct: 557 CQRPEFIVNFPLVDFIHSRWGLLNLSAKLPPDTLQPEVGLKL 598
>12_02_1218 -
27088206-27088214,27088577-27088643,27088755-27088821,
27088934-27089054,27089272-27089351,27089574-27089686,
27090305-27090420,27090507-27090575,27090684-27090758,
27090836-27090880,27091100-27091187,27091488-27091570,
27091655-27091705,27091848-27091905,27092019-27092201,
27092385-27092546,27092713-27093029
Length = 567
Score = 31.5 bits (68), Expect = 0.40
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +2
Query: 218 LKDWPPGEDFAELLPARF--DDLMRALPLSEYTSRNGKLNLAA-RLPECFVRPDLGPK 382
L + P F +L+PA D+ + A+ ++Y+S K+N+A RLP+ D P+
Sbjct: 344 LSNATPYRTFVDLVPANVLPDNFLSAIKTADYSSATTKINVAVDRLPQFSCCKDFNPE 401
>05_07_0063 -
27428056-27428184,27428321-27428460,27428698-27428926,
27429231-27429281,27429411-27429636,27430230-27430300,
27430466-27430585,27430671-27430865,27431088-27431152,
27431232-27431322,27431607-27431707,27431767-27431817,
27432076-27432177,27432406-27432510,27432600-27432663,
27433023-27433151
Length = 622
Score = 30.7 bits (66), Expect = 0.69
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -3
Query: 427 VQVGGPAGAAVRRVHLGSEVGSHKALGQARGQVQFPVARGVLG 299
V + GPA AAV VH + HKA+ + QFP R +G
Sbjct: 428 VSIRGPAEAAVDAVHAILKELVHKAINETHELKQFPTLRVEVG 470
>08_02_1177 + 24946763-24947275
Length = 170
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = -2
Query: 371 GRVAQSTRAGARPSSVSRCARCTRRVG 291
G V S++A +R SSV+RC C RRVG
Sbjct: 94 GPVESSSKA-SRSSSVNRCHSCRRRVG 119
>09_04_0225 - 15855544-15855727,15855796-15856406
Length = 264
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = -2
Query: 377 VRGRVAQ-STRAGARPSSVSRCARCT 303
+RG+ + ST AGA PS+ +RC CT
Sbjct: 159 LRGKPRRTSTSAGATPSATTRCRSCT 184
>04_04_1049 +
30414545-30414596,30414732-30414853,30415121-30415198,
30415329-30415459,30415644-30417552,30417797-30417836,
30418194-30418259,30418583-30418734
Length = 849
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -2
Query: 362 AQSTRAGARPSSVSRCARCTRRVGELA*DHRSAPEAARRS 243
A + R+ RPSS R RR GE D + +AAR S
Sbjct: 251 AVTIRSSIRPSSREFMERSPRRAGEAENDRKEVADAARPS 290
>11_06_0300 +
22095396-22096145,22096261-22096344,22097062-22097304,
22098535-22098702,22098895-22099008,22099378-22099890
Length = 623
Score = 28.3 bits (60), Expect = 3.7
Identities = 22/81 (27%), Positives = 37/81 (45%)
Frame = +2
Query: 131 NQPARKFWDGFDLAVKRLRDERGAPMVLKLKDWPPGEDFAELLPARFDDLMRALPLSEYT 310
++ ARKF + V+ + GAP+ +L+D G D P R DL+ +S +
Sbjct: 252 HEEARKF--SYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQS 309
Query: 311 SRNGKLNLAARLPECFVRPDL 373
R L+ A R+ + P +
Sbjct: 310 IRYLALDEADRMLDMGFEPQV 330
>09_04_0568 + 18591757-18592251
Length = 164
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = -2
Query: 341 ARPSSVSRCARCTRRVG 291
A+ S+V+RC+RC +RVG
Sbjct: 97 AKTSAVNRCSRCRKRVG 113
>02_02_0125 - 7026037-7027377
Length = 446
Score = 27.5 bits (58), Expect = 6.5
Identities = 21/69 (30%), Positives = 33/69 (47%)
Frame = -3
Query: 421 VGGPAGAAVRRVHLGSEVGSHKALGQARGQVQFPVARGVLGEWESSHEIIEARRKQLGEV 242
+GG AAV V G +VG L R + R + + E++ E + R++ GEV
Sbjct: 351 IGGALAAAVNTVEHGGQVGMVFEL--CRNVA--GIYRKIQEDIEANLEEADVERRENGEV 406
Query: 241 FARRPVLEL 215
F + L+L
Sbjct: 407 FETKVALQL 415
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,000,732
Number of Sequences: 37544
Number of extensions: 203692
Number of successful extensions: 778
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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