Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303A09f
         (504 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17697| Best HMM Match : JmjC (HMM E-Value=2.4e-11)                  57   9e-09
SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23)                   30   1.2  
SB_21549| Best HMM Match : SNF (HMM E-Value=2.3e-18)                   28   3.8  
SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  

>SB_17697| Best HMM Match : JmjC (HMM E-Value=2.4e-11)
          Length = 1054

 Score = 56.8 bits (131), Expect = 9e-09
 Identities = 24/51 (47%), Positives = 34/51 (66%)
 Frame = +2

Query: 35  LXXDLWSPESFSRDFGDTRVDLVNCASGLVVPNQPARKFWDGFDLAVKRLR 187
           L  +LWSPESF  +FGD   D+VNC +G+V+ N     FW GF+ ++K L+
Sbjct: 531 LDTNLWSPESFGEEFGDELADVVNCRNGVVIENFEVGAFWKGFE-SIKDLK 580



 Score = 35.5 bits (78), Expect = 0.025
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = +2

Query: 419 NLHLDVSDAVNVMVHASAPAD 481
           NLH+D+SDAVNVMV+   P D
Sbjct: 614 NLHIDMSDAVNVMVYVGVPRD 634


>SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23)
          Length = 1189

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -1

Query: 189  SRSRLTARSNPSQNFLAG*LGTTRPDAQFTRSTRVSPKSREK 64
            +R +   R+N  Q + AG LG  RPD  ++R T V P+ + K
Sbjct: 1148 TRPQFMRRNNMPQAYRAGFLGFYRPD--YSRLTMVQPRHKRK 1187


>SB_21549| Best HMM Match : SNF (HMM E-Value=2.3e-18)
          Length = 515

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 11/39 (28%), Positives = 24/39 (61%)
 Frame = +2

Query: 137 PARKFWDGFDLAVKRLRDERGAPMVLKLKDWPPGEDFAE 253
           P+ +FW G + ++ RL ++    + ++L+DW   + +AE
Sbjct: 165 PSGEFWLGLE-SIHRLTNQEARTLRVELEDWEGRQGYAE 202


>SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1778

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = -3

Query: 376  SEVGSHKALGQARGQVQFPVARGVLGEWE---SSHEIIEARRKQLGEVFARRPVLELEH 209
            SE GSH  +G  RGQ   PV   V  E     S H +   RR++ G+  A     +L+H
Sbjct: 1280 SESGSHSMVGTRRGQSGHPVHLHVARERSRCVSGHAL--TRRQETGDSNASEEQRKLKH 1336


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,113,850
Number of Sequences: 59808
Number of extensions: 217582
Number of successful extensions: 644
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)