Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303A09f
(504 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g62310.1 68414.m07031 transcription factor jumonji (jmjC) dom... 92 2e-19
At3g07610.1 68416.m00911 transcription factor jumonji (jmjC) dom... 84 6e-17
At4g00990.1 68417.m00133 transcription factor jumonji (jmjC) dom... 79 1e-15
At1g11950.1 68414.m01381 transcription factor jumonji (jmjC) dom... 77 7e-15
At1g09060.2 68414.m01011 transcription factor jumonji (jmjC) dom... 54 5e-08
At1g09060.1 68414.m01010 transcription factor jumonji (jmjC) dom... 54 5e-08
At4g21430.1 68417.m03097 transcription factor jumonji (jmjC) dom... 47 8e-06
At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase fami... 31 0.33
At5g24740.1 68418.m02920 expressed protein 29 1.8
At3g61760.1 68416.m06927 dynamin-like protein B (DL1B) identical... 29 2.4
At4g30780.1 68417.m04361 expressed protein hypothetical protein ... 27 7.2
>At1g62310.1 68414.m07031 transcription factor jumonji (jmjC)
domain-containing protein similar to nuclear protein
5qNCA [Homo sapiens] GI:13161188; contains Pfam profile
PF02373: jmjC domain
Length = 883
Score = 91.9 bits (218), Expect = 2e-19
Identities = 51/135 (37%), Positives = 75/135 (55%), Gaps = 7/135 (5%)
Frame = +2
Query: 86 TRVDLVNCASGLVVPNQPARKFWDGFDLAVKRLRDERGAPMVLKLKDWPPGEDFAELLPA 265
++V ++C + V R+F++G+ K E P +LKLKDWPP + F +LLP
Sbjct: 560 SQVKAIDCLANCEVEIN-TRQFFEGYS---KGRTYENFWPEMLKLKDWPPSDKFEDLLPR 615
Query: 266 RFDDLMRALPLSEYTS-RNGKLNLAARLPECFVRPDLGPK------MXXXXXXXXXXXNL 424
D+ + ALP EY+ R G LN+A +LPE F++PDLGPK + L
Sbjct: 616 HCDEFISALPFQEYSDPRTGILNIATKLPEGFIKPDLGPKTYIAYGIPDELGRGDSVTKL 675
Query: 425 HLDVSDAVNVMVHAS 469
H D+SDAVN++ H +
Sbjct: 676 HCDMSDAVNILTHTA 690
>At3g07610.1 68416.m00911 transcription factor jumonji (jmjC)
domain-containing protein contains Pfam domain, PF02373:
jmjC domain
Length = 1027
Score = 83.8 bits (198), Expect = 6e-17
Identities = 43/101 (42%), Positives = 58/101 (57%), Gaps = 7/101 (6%)
Frame = +2
Query: 188 DERGAPMVLKLKDWPPGEDFAELLPARFDDLMRALPLSEYTSR-NGKLNLAARLPECFVR 364
D G P+VLKLKDWPP + F + LP ++ + +LPL YT NG LNLA +LP+ ++
Sbjct: 593 DRMGWPLVLKLKDWPPAKVFKDNLPRHAEEFLCSLPLKHYTHPVNGPLNLAVKLPQNCLK 652
Query: 365 PDLGPK------MXXXXXXXXXXXNLHLDVSDAVNVMVHAS 469
PD+GPK LH D+SDAVN++ H S
Sbjct: 653 PDMGPKTYVASGFAQELGRGDSVTKLHCDMSDAVNILTHIS 693
>At4g00990.1 68417.m00133 transcription factor jumonji (jmjC)
domain-containing protein contains Pfam domain, PF02373:
jmjC domain
Length = 840
Score = 79.4 bits (187), Expect = 1e-15
Identities = 48/135 (35%), Positives = 71/135 (52%), Gaps = 7/135 (5%)
Frame = +2
Query: 86 TRVDLVNCASGLVVPNQPARKFWDGFDLAVKRLRDERGAPMVLKLKDWPPGEDFAELLPA 265
T+V ++C V +F++G+ ++ + G P +LKLKDWPP + F + LP
Sbjct: 430 TKVKALDCLDWCEVEIN-LHQFFEGY---LEGRMHKNGWPEMLKLKDWPPSDLFEKRLPR 485
Query: 266 RFDDLMRALPLSEYTS-RNGKLNLAARLPECFVRPDLGPK------MXXXXXXXXXXXNL 424
+ + ALP +YT ++G LNLA R PE ++PDLGPK L
Sbjct: 486 HNAEFIAALPFFDYTDPKSGILNLATRFPEGSLKPDLGPKTYIAYGFHEELNRGDSVTKL 545
Query: 425 HLDVSDAVNVMVHAS 469
H D+SDAVNV+ H +
Sbjct: 546 HCDISDAVNVLTHTA 560
>At1g11950.1 68414.m01381 transcription factor jumonji (jmjC)
domain-containing protein contains Pfam domain, PF02373:
jmjC domain; non-consensus TG acceptor splice site at
exon boundary 79262
Length = 880
Score = 77.0 bits (181), Expect = 7e-15
Identities = 40/93 (43%), Positives = 53/93 (56%), Gaps = 7/93 (7%)
Frame = +2
Query: 203 PMVLKLKDWPPGEDFAELLPARFDDLMRALPLSEYTS-RNGKLNLAARLPECFVRPDLGP 379
P +LKLKDWPP + F LLP D+ + ALP EY+ R+G LN+A +LPE ++PDLGP
Sbjct: 577 PEMLKLKDWPPSDKFENLLPRHCDEFISALPFQEYSDPRSGILNIATKLPEGLLKPDLGP 636
Query: 380 K------MXXXXXXXXXXXNLHLDVSDAVNVMV 460
K LH D+SDAV+ +
Sbjct: 637 KTYVAYGTSDELGRGDSVTKLHCDMSDAVSFRI 669
>At1g09060.2 68414.m01011 transcription factor jumonji (jmjC)
domain-containing protein contains Pfam domain, PF02373:
jmjC domain
Length = 930
Score = 54.0 bits (124), Expect = 5e-08
Identities = 46/160 (28%), Positives = 69/160 (43%), Gaps = 20/160 (12%)
Frame = +2
Query: 50 WSPESFSRDFG----------DTRVDLVNCASGLVVP---NQPARKFWDGFDLAVKRLRD 190
W PE+ RD D + +NC GL V + R + DG +
Sbjct: 513 WDPETIWRDIDELSDEKLREHDPFLKAINCLDGLEVDVRLGEFTRAYKDGKN-------Q 565
Query: 191 ERGAPMVLKLKDWPPGEDFAELLPARFDDLMRALPLSEYT-SRNGKLNLAARLPECFVRP 367
E G P++ KLKDWP E + + + +R+ P EY R G LN+AA+LP ++
Sbjct: 566 ETGLPLLWKLKDWPSPSASEEFIFYQRPEFIRSFPFLEYIHPRLGLLNVAAKLPHYSLQN 625
Query: 368 DLGPKM------XXXXXXXXXXXNLHLDVSDAVNVMVHAS 469
D GPK+ +H ++ D V ++VH S
Sbjct: 626 DSGPKIYVSCGTYQEISAGDSLTGIHYNMRDMVYLLVHTS 665
>At1g09060.1 68414.m01010 transcription factor jumonji (jmjC)
domain-containing protein contains Pfam domain, PF02373:
jmjC domain
Length = 930
Score = 54.0 bits (124), Expect = 5e-08
Identities = 46/160 (28%), Positives = 69/160 (43%), Gaps = 20/160 (12%)
Frame = +2
Query: 50 WSPESFSRDFG----------DTRVDLVNCASGLVVP---NQPARKFWDGFDLAVKRLRD 190
W PE+ RD D + +NC GL V + R + DG +
Sbjct: 513 WDPETIWRDIDELSDEKLREHDPFLKAINCLDGLEVDVRLGEFTRAYKDGKN-------Q 565
Query: 191 ERGAPMVLKLKDWPPGEDFAELLPARFDDLMRALPLSEYT-SRNGKLNLAARLPECFVRP 367
E G P++ KLKDWP E + + + +R+ P EY R G LN+AA+LP ++
Sbjct: 566 ETGLPLLWKLKDWPSPSASEEFIFYQRPEFIRSFPFLEYIHPRLGLLNVAAKLPHYSLQN 625
Query: 368 DLGPKM------XXXXXXXXXXXNLHLDVSDAVNVMVHAS 469
D GPK+ +H ++ D V ++VH S
Sbjct: 626 DSGPKIYVSCGTYQEISAGDSLTGIHYNMRDMVYLLVHTS 665
>At4g21430.1 68417.m03097 transcription factor jumonji (jmjC)
domain-containing protein contains Pfam domain, PF02373:
jmjC domain
Length = 728
Score = 46.8 bits (106), Expect = 8e-06
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +2
Query: 212 LKLKDWPPGEDFAELLPARFDDLMRALPLSEYTS-RNGKLNLAARLPECFVRPDLGP 379
LKL+ W F E P + +++ LP+S Y + G LN+AA LP+ PD GP
Sbjct: 387 LKLEGWLSSSLFKEQFPNHYAEILNILPISHYMDPKRGLLNIAANLPDTVQPPDFGP 443
>At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase family
protein contains Pfam profile PF00383: Cytidine and
deoxycytidylate deaminase zinc-binding region
Length = 1307
Score = 31.5 bits (68), Expect = 0.33
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = -3
Query: 370 VGSHKALGQARGQVQFPVARGVLGEWESSHEIIEARRKQLGEVFARRPVLE 218
V + AL Q + Q V R EWE ++++ EA R+ + E+F R ++E
Sbjct: 1071 VSADSALIQRKLQRNKQVVRDSFEEWEEAYKV-EAERRTVDEIFMREALVE 1120
>At5g24740.1 68418.m02920 expressed protein
Length = 3306
Score = 29.1 bits (62), Expect = 1.8
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = -3
Query: 355 ALGQARGQVQFPVARGVLGEWESSHEIIEARRKQLGEVFARRPVLELEHHGSAAFVSQPL 176
AL A Q +G++ + H++ ++QLGE + V+ G + P+
Sbjct: 3004 ALSDAATQFSKAAHKGIVAFTFNDHDVARMEKQQLGEGSRSKGVIGEVFEGLTGLLQSPI 3063
Query: 175 DG-EIESIPELPSGL 134
G E +P + SG+
Sbjct: 3064 RGAEKHGLPGVISGV 3078
>At3g61760.1 68416.m06927 dynamin-like protein B (DL1B) identical to
dynamin-like protein B [Arabidopsis thaliana]
GI:27543504; strong similarity to GTP-binding protein
[Arabidopsis thaliana] GI:807577, phragmoplastin SDL5A
[Glycine max] GI:1218004; contains Pfam profiles
PF01031: Dynamin central region, PF00350: Dynamin
family, PF02212: Dynamin GTPase effector domain
Length = 610
Score = 28.7 bits (61), Expect = 2.4
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -3
Query: 427 VQVGGPAGAAVRRVHLGSEVGSHKALGQARGQVQFPVAR 311
V + GPA AAV VH + HK++G+ Q+P R
Sbjct: 416 VSIRGPAEAAVDAVHSILKDLIHKSMGETSELKQYPTLR 454
>At4g30780.1 68417.m04361 expressed protein hypothetical protein
F27D4.1 - Arabidopsis thaliana,PID:g4115371
Length = 589
Score = 27.1 bits (57), Expect = 7.2
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 164 DLAVKRLRDERGAPMVLKLKDWPPGEDFAELLPARFDDLMRALPL 298
++A L +E G P+ + + W PG + + PA+++ L PL
Sbjct: 29 EIAEDDLEEEHG-PLNKRSRLWSPGTSSSTMAPAKYNPLDEPSPL 72
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,317,848
Number of Sequences: 28952
Number of extensions: 146287
Number of successful extensions: 531
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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