Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303A08f
         (473 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8535| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.5  

>SB_8535| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 236

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 114 CKLY*TCVSQNTGTCPESSCACPETSC 194
           C L   C SQ   TC + +C C  TSC
Sbjct: 183 CPLATPCASQFGITCRKLTCFCSRTSC 209


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.285    0.107    0.279 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,922,258
Number of Sequences: 59808
Number of extensions: 34084
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 18 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 45 (21.7 bits)