Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303A07f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g54990.1 68416.m06102 AP2 domain-containing transcription fac... 30 1.1
At5g61950.1 68418.m07776 ubiquitin carboxyl-terminal hydrolase-r... 29 1.9
At3g07740.2 68416.m00935 transcriptional adaptor (ADA2a) identic... 29 1.9
At3g07740.1 68416.m00936 transcriptional adaptor (ADA2a) identic... 29 1.9
At5g23910.1 68418.m02808 kinesin motor protein-related 29 2.5
At5g55540.1 68418.m06919 expressed protein 28 3.3
At1g67170.1 68414.m07641 expressed protein similar to enterophil... 28 3.3
At1g07250.1 68414.m00771 UDP-glucoronosyl/UDP-glucosyl transfera... 28 3.3
At5g23440.1 68418.m02750 ferredoxin-thioredoxin reductase, putat... 28 4.4
At4g01090.1 68417.m00147 extra-large G-protein-related contains ... 28 4.4
At3g44290.1 68416.m04756 no apical meristem (NAM) family protein... 27 5.8
At3g42070.1 68416.m04317 hypothetical protein 27 7.7
At3g28345.1 68416.m03541 ABC transporter family protein similar ... 27 7.7
>At3g54990.1 68416.m06102 AP2 domain-containing transcription
factor, putative similar to (SP:P47927) Floral homeotic
protein APETALA2, Arabidopsis thaliana, U12546
Length = 247
Score = 29.9 bits (64), Expect = 1.1
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 44 YDRYLTEYEH-DIDRQNVQNTFRHDWQKRDAVEESQILAVLRAFSKRFGRHQSRGK 208
YDR ++ D D V + +RHD K + + + + LR S FGR S+ K
Sbjct: 161 YDRAAIKFRGLDADINFVVDDYRHDIDKMKNLNKVEFVQTLRRESASFGRGSSKYK 216
>At5g61950.1 68418.m07776 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1132
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -1
Query: 518 QPVDGSQPVEMVLPCLVGVEGINSTSHASWHVVDWPVIIERAR 390
+PVD VEM+ L V+ S S W +WP+ ++ R
Sbjct: 298 EPVDAVAAVEMIKNQLADVKAFASKSKNGWS-YEWPLAVDEER 339
>At3g07740.2 68416.m00935 transcriptional adaptor (ADA2a) identical
to transcriptional adaptor ADA2a [Arabidopsis thaliana]
gi|13591698|gb|AAK31319
Length = 477
Score = 29.1 bits (62), Expect = 1.9
Identities = 19/55 (34%), Positives = 24/55 (43%)
Frame = +2
Query: 38 FNYDRYLTEYEHDIDRQNVQNTFRHDWQKRDAVEESQILAVLRAFSKRFGRHQSR 202
+N R E EHD D + + DA E Q L VLR +SKR + R
Sbjct: 204 YNLKREEFEIEHDNDAEQLLADMEFKDSDTDA-EREQKLQVLRIYSKRLDERKRR 257
>At3g07740.1 68416.m00936 transcriptional adaptor (ADA2a) identical
to transcriptional adaptor ADA2a [Arabidopsis thaliana]
gi|13591698|gb|AAK31319
Length = 548
Score = 29.1 bits (62), Expect = 1.9
Identities = 19/55 (34%), Positives = 24/55 (43%)
Frame = +2
Query: 38 FNYDRYLTEYEHDIDRQNVQNTFRHDWQKRDAVEESQILAVLRAFSKRFGRHQSR 202
+N R E EHD D + + DA E Q L VLR +SKR + R
Sbjct: 275 YNLKREEFEIEHDNDAEQLLADMEFKDSDTDA-EREQKLQVLRIYSKRLDERKRR 328
>At5g23910.1 68418.m02808 kinesin motor protein-related
Length = 665
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 268 SRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLAL 399
S+ T L L+G +TCL++ R T R + T T A+
Sbjct: 261 SKLTRMLKDCLKGSNITLLITCLTVLRGNVTERKTKINTATSAI 304
>At5g55540.1 68418.m06919 expressed protein
Length = 1380
Score = 28.3 bits (60), Expect = 3.3
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = -2
Query: 241 SGKTLRRVGLYLSSALMSSEPFRE----RTKDCQNLA 143
SGKT+ R G L+ L+S + FRE R D NLA
Sbjct: 1057 SGKTVLRAGFDLARNLLSDDDFREVLQRRYHDLHNLA 1093
>At1g67170.1 68414.m07641 expressed protein similar to
enterophilin-2L (GI:12718845) [Cavia porcellus]; similar
to Hyaluronan mediated motility receptor (Intracellular
hyaluronic acid binding protein) (Receptor for
hyaluronan-mediated motility) (CD168 antigen)
(Swiss-Prot:O75330) [Homo sapiens]
Length = 359
Score = 28.3 bits (60), Expect = 3.3
Identities = 19/80 (23%), Positives = 33/80 (41%)
Frame = +3
Query: 111 MIGRNETPSKKARFWQSFVRSLKGSEDIRAEERYRPTRRSVFPELLSTYPYSKSIYDDPI 290
++ R E SK + Q +S + I A R + + +TY Y K Y+D +
Sbjct: 150 VVAREELMSKVHQLTQELQKSRSDVQQIPALMSELENLRQEYQQCRATYDYEKKFYNDHL 209
Query: 291 AAAERITVPGYRYLPVHREI 350
E + Y+ + RE+
Sbjct: 210 ---ESLQAMEKNYMTMAREV 226
>At1g07250.1 68414.m00771 UDP-glucoronosyl/UDP-glucosyl transferase
family protein similar to UDP-glucose
glucosyltransferase GI:453245 from [Manihot esculenta]
Length = 479
Score = 28.3 bits (60), Expect = 3.3
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = -1
Query: 458 GINSTSHASWH---VVDWPVIIERARVVVGIDRARGVAVDLAMD 336
G NST + W V WP+ E+ + + G+AVDL MD
Sbjct: 369 GWNSTLESLWFGVPVATWPMYAEQQLNAFTLVKELGLAVDLRMD 412
>At5g23440.1 68418.m02750 ferredoxin-thioredoxin reductase, putative
similar to ferredoxin-thioredoxin reductase, variable
chain (FTR-V, Ferredoxin- thioredoxin reductase subunit
A, FTR-A) [Zea mays] SWISS-PROT:P80680
Length = 182
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +1
Query: 307 LRYPATVTCLSIARSTATPRALSMPTTTLA-LSIITGQS 420
+R P++ CLS + +TAT +++ + +A LS+ T QS
Sbjct: 15 IRRPSSHDCLSASATTATATPMALKSCIVAPLSLFTSQS 53
>At4g01090.1 68417.m00147 extra-large G-protein-related contains
weak similarity to extra-large G-protein [Arabidopsis
thaliana] gi|3201682|gb|AAC19353
Length = 714
Score = 27.9 bits (59), Expect = 4.4
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +3
Query: 333 PVHREIYG-YSPRPIYAHNYPRSLDYYRPIY 422
PVH + ++P P Y H YP + Y P++
Sbjct: 116 PVHLHGHANHNPGPSYYHQYPEPIQYPGPVH 146
>At3g44290.1 68416.m04756 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
NAC2 - Arabidopsis thaliana, EMBL:AF201456
Length = 335
Score = 27.5 bits (58), Expect = 5.8
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -1
Query: 476 CLVGVEGINSTSHASWHVVDWPVII 402
C +G+ I S + A W VV W +++
Sbjct: 302 CFIGIYSIKSINRARWDVVVWLLVM 326
>At3g42070.1 68416.m04317 hypothetical protein
Length = 230
Score = 27.1 bits (57), Expect = 7.7
Identities = 21/94 (22%), Positives = 37/94 (39%)
Frame = +3
Query: 150 FWQSFVRSLKGSEDIRAEERYRPTRRSVFPELLSTYPYSKSIYDDPIAAAERITVPGYRY 329
FW F + S+D E P R Y +++ + A +++ +
Sbjct: 97 FWSRFGNGIYDSKDAVHSEIRHPVLR---------YLVDRNVNFGSVFAHHLVSLKTKPF 147
Query: 330 LPVHREIYGYSPRPIYAHNYPRSLDYYRPIYHVP 431
H E+ G+ P P H+ PR++ + Y VP
Sbjct: 148 TGEHEEL-GFHPDPSLLHSAPRTMKHRALPYQVP 180
>At3g28345.1 68416.m03541 ABC transporter family protein similar to
P-glycoprotein [Arabidopsis thaliana] GI:3849833;
contains Pfam profiles PF00005: ABC transporter,
PF00664: ABC transporter transmembrane region
Length = 1240
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +2
Query: 380 PQLPSLSRLLQANLPRAK 433
PQLPS RLL NLP K
Sbjct: 653 PQLPSFKRLLAMNLPEWK 670
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,038,670
Number of Sequences: 28952
Number of extensions: 259626
Number of successful extensions: 820
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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