Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303A06f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4...    29   0.42 
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    26   3.0  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    25   9.0  
SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans...    25   9.0  
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    25   9.0  

>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
           4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 21/46 (45%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = +2

Query: 83  LVNHFDIHCLLGS--WN--SGWHLHYCTSVHSVHRGVIWFSRFPII 208
           LV+  DI+C+ GS  W   S  H H    VHSV    I  SR PII
Sbjct: 258 LVHPEDIYCISGSSDWVCVSTQHFHCNIHVHSVSGNAIRKSRNPII 303


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 198 FLLSVVQFPKYCAQAMMEGRGFN*FRHNF 284
           FLL+ +Q+ + C ++  E R +  F HNF
Sbjct: 396 FLLADIQWQRVCYKSFRESRTWLHFLHNF 424


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
            complex subunit Taf111|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 979

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -2

Query: 124  PATQKAMNIKMINQIMENNTLPIFGFP 44
            P T+K  N   +  +  N   P+FG P
Sbjct: 942  PTTRKCSNCGQVGHMKTNKICPLFGRP 968


>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
           transporter Hut1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 326 KFTIMISIYDTLTTKIMSKLIKSSSFHHGLRAI 228
           KF  +  +  TLT KI + L+    FHH + +I
Sbjct: 258 KFGSITLVTITLTRKIFTMLLSVFHFHHTVSSI 290


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 396 FHSDMVYQCCTLQHKYRTTENKLFYLAITDHYEE 497
           F+  +  +CCTLQH  +    K F  ++ D + E
Sbjct: 617 FYGLVALKCCTLQHNLK----KSFQFSLWDFFNE 646


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,189,108
Number of Sequences: 5004
Number of extensions: 45761
Number of successful extensions: 106
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)