Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303A06f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1209 - 9738501-9738516,9738703-9739161,9739389-9739608,973...    29   1.7  
04_04_1690 - 35382241-35382553,35382614-35382933,35383601-353851...    27   9.1  
03_06_0507 + 34404843-34404968,34405091-34405151,34405260-344052...    27   9.1  

>01_01_1209 - 9738501-9738516,9738703-9739161,9739389-9739608,
            9739708-9739831,9739927-9740635,9741826-9742132,
            9742213-9743704
          Length = 1108

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +1

Query: 310  IIIVNFNYGAIYVLKPFWFVIYSPF*REIFTQIWCTSVALYNI 438
            +I+ NF   A +VL  FW+V+Y+ F   + T I   S  LY +
Sbjct: 934  MILYNFYKNATFVLVLFWYVLYTAF--TLTTAITEWSSLLYTV 974


>04_04_1690 -
           35382241-35382553,35382614-35382933,35383601-35385164,
           35385254-35385372,35385701-35385811,35386068-35386595,
           35386702-35386881,35386957-35387556,35387646-35388066,
           35388183-35388280,35388372-35389260,35389366-35389544,
           35389647-35389763,35389862-35389952,35390578-35390753
          Length = 1901

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +2

Query: 404 RYGVPVLHSTT*VPYYRKQIV 466
           +Y   VLH TT VPY RK IV
Sbjct: 870 QYAFGVLHITTLVPYCRKLIV 890


>03_06_0507 +
           34404843-34404968,34405091-34405151,34405260-34405296,
           34405365-34405386,34405861-34405957,34406037-34406180,
           34407034-34407173,34408205-34408255,34408347-34408429,
           34408515-34408590,34408646-34408760,34409080-34409575,
           34409682-34409895,34410000-34410070,34410527-34410695,
           34410787-34410916,34411330-34411742,34411839-34412039
          Length = 881

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 139 MPAAIPATQKAMNIKMINQIMENNTLPIFGFPR 41
           +PA++PA  K  N K + +  E NTLP   F +
Sbjct: 408 LPASVPAADKLENSKRVAE--EENTLPASKFKK 438


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,286,848
Number of Sequences: 37544
Number of extensions: 263379
Number of successful extensions: 462
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)