Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303A06f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45352| Best HMM Match : PAN (HMM E-Value=0.00031)                   32   0.33 
SB_57632| Best HMM Match : Fibrinogen_C (HMM E-Value=8)                31   0.76 
SB_53096| Best HMM Match : PHD (HMM E-Value=0.001)                     31   0.76 
SB_45350| Best HMM Match : PAN (HMM E-Value=0.00039)                   31   0.76 
SB_46871| Best HMM Match : PAN (HMM E-Value=1)                         29   1.8  
SB_23472| Best HMM Match : HIT (HMM E-Value=0.43)                      28   4.1  
SB_18966| Best HMM Match : RVT_1 (HMM E-Value=0.028)                   28   4.1  
SB_2085| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.1  
SB_49562| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_25064| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_19427| Best HMM Match : RVT_1 (HMM E-Value=7.5e-32)                 28   4.1  
SB_12041| Best HMM Match : PHD (HMM E-Value=0.001)                     28   4.1  
SB_12008| Best HMM Match : RVT_1 (HMM E-Value=0)                       28   4.1  
SB_29292| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  

>SB_45352| Best HMM Match : PAN (HMM E-Value=0.00031)
          Length = 332

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 408 MVYQCCTLQHKYRTTENKLFYLAITDHYEEREYCPLES 521
           M+++ C+   KY  TEN L+YL  T H     YC   S
Sbjct: 119 MLFKQCSDHFKYGVTENGLYYLQDTHHNWYPVYCDFTS 156


>SB_57632| Best HMM Match : Fibrinogen_C (HMM E-Value=8)
          Length = 214

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 408 MVYQCCTLQHKYRTTENKLFYLAITDHYEEREYCPLES 521
           M+++ C+   KY  T+N L+YL  T H     YC   S
Sbjct: 1   MLFKQCSDHFKYGVTQNGLYYLQDTHHNWYPVYCDFTS 38


>SB_53096| Best HMM Match : PHD (HMM E-Value=0.001)
          Length = 623

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +2

Query: 62  QRVVFHNLVNHFDIHCLLGSWNSGWHLH 145
           + ++FH+++NH D H +L  +  G+  H
Sbjct: 572 EHIIFHDIMNHLDTHNILVKFQHGFRRH 599


>SB_45350| Best HMM Match : PAN (HMM E-Value=0.00039)
          Length = 334

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 408 MVYQCCTLQHKYRTTENKLFYLAITDHYEEREYCPLES 521
           M+++ C+   KY  T+N L+YL  T H     YC   S
Sbjct: 121 MLFKQCSDHFKYGVTQNGLYYLQDTHHNWYPVYCDFTS 158


>SB_46871| Best HMM Match : PAN (HMM E-Value=1)
          Length = 525

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +1

Query: 250 KEEDLINLDI---IFVVNVSYIDIIIVNFNYGAIYVLKPFW 363
           K E+LIN  +     ++N SY DI+ V       YV+  FW
Sbjct: 295 KRENLINCHVSPHFLIINGSYFDIVCVLLRMRGGYVVSYFW 335


>SB_23472| Best HMM Match : HIT (HMM E-Value=0.43)
          Length = 168

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +2

Query: 62  QRVVFHNLVNHFDIHCLLGSWNSGW 136
           + ++FH+++NH D H +L  +  G+
Sbjct: 43  EHIIFHDIMNHLDTHNILVKFQHGF 67


>SB_18966| Best HMM Match : RVT_1 (HMM E-Value=0.028)
          Length = 252

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +2

Query: 62  QRVVFHNLVNHFDIHCLLGSWNSGW 136
           + ++FH+++NH D H +L  +  G+
Sbjct: 88  EHIIFHDIMNHLDTHNILVKFQHGF 112


>SB_2085| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/42 (42%), Positives = 19/42 (45%)
 Frame = -2

Query: 256 LPSIMACAQYFGN*TTDNRKSAKPDNASMHTVNGSTIM*MPA 131
           LPS M  A   GN T   R S KP  AS+   NG      PA
Sbjct: 11  LPSTMCLATSRGNITPFIRSSVKPLRASIQASNGDKHTYQPA 52


>SB_49562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 734

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +2

Query: 62  QRVVFHNLVNHFDIHCLLGSWNSGW 136
           + ++FH+++NH D H +L  +  G+
Sbjct: 177 EHIIFHDIMNHLDTHNILVKFQHGF 201


>SB_25064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1134

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +2

Query: 62  QRVVFHNLVNHFDIHCLLGSWNSGW 136
           + ++FH+++NH D H +L  +  G+
Sbjct: 672 EHIIFHDIMNHIDTHNILVKFQHGF 696


>SB_19427| Best HMM Match : RVT_1 (HMM E-Value=7.5e-32)
          Length = 698

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +2

Query: 62  QRVVFHNLVNHFDIHCLLGSWNSGW 136
           + ++FH+++NH D H +L  +  G+
Sbjct: 291 EHIIFHDIMNHLDTHNILVKFQHGF 315


>SB_12041| Best HMM Match : PHD (HMM E-Value=0.001)
          Length = 560

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +2

Query: 62  QRVVFHNLVNHFDIHCLLGSWNSGW 136
           + ++FH+++NH D H +L  +  G+
Sbjct: 502 EHIIFHDIMNHLDTHNILVKFQHGF 526


>SB_12008| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 979

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +2

Query: 62  QRVVFHNLVNHFDIHCLLGSWNSGW 136
           + ++FH+++NH D H +L  +  G+
Sbjct: 128 EHIIFHDIMNHLDTHNILVKFQHGF 152


>SB_29292| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 717

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +2

Query: 62  QRVVFHNLVNHFDIHCLLGSWNSGW 136
           + ++FH+++NH D H +L  +  G+
Sbjct: 687 KHIIFHDIMNHLDTHNILVKFQHGF 711


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,812,004
Number of Sequences: 59808
Number of extensions: 325809
Number of successful extensions: 754
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)