Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303A06f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100659-7|AAC68967.1|  688|Caenorhabditis elegans Hypothetical ...    28   4.7  
Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical p...    27   8.1  

>AF100659-7|AAC68967.1|  688|Caenorhabditis elegans Hypothetical
           protein F58E2.4 protein.
          Length = 688

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 423 CTLQHKYRTTENKLFYLAITDHYEEREYCPLE 518
           CT +H  +  +N L    I +H E ++ C L+
Sbjct: 317 CTSEHSSKVLQNALLMKNILNHLERKDICRLQ 348


>Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical protein
            F25F2.2 protein.
          Length = 4307

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +1

Query: 250  KEEDLINLDIIFVVNVSYIDIIIVN 324
            +++DL+N D   V+NVS  D IIVN
Sbjct: 2368 EQDDLVNEDTKKVLNVSVTDGIIVN 2392


>Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical protein
            F25F2.2 protein.
          Length = 4307

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +1

Query: 250  KEEDLINLDIIFVVNVSYIDIIIVN 324
            +++DL+N D   V+NVS  D IIVN
Sbjct: 2368 EQDDLVNEDTKKVLNVSVTDGIIVN 2392


>Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical
            protein F25F2.2 protein.
          Length = 4307

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +1

Query: 250  KEEDLINLDIIFVVNVSYIDIIIVN 324
            +++DL+N D   V+NVS  D IIVN
Sbjct: 2368 EQDDLVNEDTKKVLNVSVTDGIIVN 2392


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,912,254
Number of Sequences: 27780
Number of extensions: 246924
Number of successful extensions: 557
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)