Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303A06f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72940.1 68414.m08436 disease resistance protein (TIR-NBS cla...    28   3.3  
At2g06210.2 68415.m00683 phosphoprotein-related low similarity t...    27   7.7  
At2g06210.1 68415.m00684 phosphoprotein-related low similarity t...    27   7.7  

>At1g72940.1 68414.m08436 disease resistance protein (TIR-NBS
           class), putative domain signature TIR-NBS exists,
           suggestive of a disease resistance protein.
          Length = 371

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 65  RVVFHNLVNHFDIHCLLGS 121
           + V+ ++ +HFD HC LGS
Sbjct: 225 KYVYQDICHHFDSHCFLGS 243


>At2g06210.2 68415.m00683 phosphoprotein-related low similarity to
           phosphoprotein from Mus musculus GI:1236239; contains
           Pfam profile PF00515 TPR Domain
          Length = 852

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 390 GNFHSDM-VYQCCTLQHKYRTTENKLFYLAITDHYEEREY 506
           GNF   + +YQ C  +  Y T    L YLA T HYE  ++
Sbjct: 488 GNFALTVKMYQNCLRKFFYNTDSQILLYLART-HYEAEQW 526


>At2g06210.1 68415.m00684 phosphoprotein-related low similarity to
           phosphoprotein from Mus musculus GI:1236239; contains
           Pfam profile PF00515 TPR Domain
          Length = 1064

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 390 GNFHSDM-VYQCCTLQHKYRTTENKLFYLAITDHYEEREY 506
           GNF   + +YQ C  +  Y T    L YLA T HYE  ++
Sbjct: 700 GNFALTVKMYQNCLRKFFYNTDSQILLYLART-HYEAEQW 738


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,050,095
Number of Sequences: 28952
Number of extensions: 223828
Number of successful extensions: 458
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)