Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303A05f
         (521 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC029478-1|AAH29478.1|  226|Homo sapiens clarin 3 protein.             31   3.2  
AL158166-1|CAI14770.1|  226|Homo sapiens clarin 3 protein.             31   3.2  
BC132874-1|AAI32875.1| 1071|Homo sapiens SLIT-ROBO Rho GTPase ac...    30   4.3  
BC132872-1|AAI32873.1| 1071|Homo sapiens SLIT-ROBO Rho GTPase ac...    30   4.3  
AL161736-2|CAH73674.1|  984|Homo sapiens SLIT-ROBO Rho GTPase ac...    30   4.3  
AB007925-1|BAA32301.1| 1095|Homo sapiens KIAA0456 protein protein.     30   4.3  

>BC029478-1|AAH29478.1|  226|Homo sapiens clarin 3 protein.
          Length = 226

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -2

Query: 160 FLIICSLTR*TPYEKLSIFIQPTVLTGELFLTVGAMRGEPRE 35
           F++ICS+     +   +I ++ +   G +F+T G  RGE  E
Sbjct: 21  FIVICSILGTQAWITSTIAVRDSASNGSIFITYGLFRGESSE 62


>AL158166-1|CAI14770.1|  226|Homo sapiens clarin 3 protein.
          Length = 226

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -2

Query: 160 FLIICSLTR*TPYEKLSIFIQPTVLTGELFLTVGAMRGEPRE 35
           F++ICS+     +   +I ++ +   G +F+T G  RGE  E
Sbjct: 21  FIVICSILGTQAWITSTIAVRDSASNGSIFITYGLFRGESSE 62


>BC132874-1|AAI32875.1| 1071|Homo sapiens SLIT-ROBO Rho GTPase
            activating protein 2 protein.
          Length = 1071

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +3

Query: 24   TLEPSRGSPLMAPTVRKSSPVST 92
            TLEP + SP++APT   SSP+ T
Sbjct: 976  TLEPLKTSPVVAPTSEPSSPLHT 998


>BC132872-1|AAI32873.1| 1071|Homo sapiens SLIT-ROBO Rho GTPase
            activating protein 2 protein.
          Length = 1071

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +3

Query: 24   TLEPSRGSPLMAPTVRKSSPVST 92
            TLEP + SP++APT   SSP+ T
Sbjct: 976  TLEPLKTSPVVAPTSEPSSPLHT 998


>AL161736-2|CAH73674.1|  984|Homo sapiens SLIT-ROBO Rho GTPase
           activating protein 2 protein.
          Length = 984

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +3

Query: 24  TLEPSRGSPLMAPTVRKSSPVST 92
           TLEP + SP++APT   SSP+ T
Sbjct: 889 TLEPLKTSPVVAPTSEPSSPLHT 911


>AB007925-1|BAA32301.1| 1095|Homo sapiens KIAA0456 protein protein.
          Length = 1095

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +3

Query: 24   TLEPSRGSPLMAPTVRKSSPVST 92
            TLEP + SP++APT   SSP+ T
Sbjct: 1000 TLEPLKTSPVVAPTSEPSSPLHT 1022


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,773,365
Number of Sequences: 237096
Number of extensions: 1315959
Number of successful extensions: 1938
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1938
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)