Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303A04f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)              172   2e-43
SB_49884| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.58 
SB_426| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)                   29   2.3  
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_48685| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_24186| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.)                 27   7.1  
SB_41995| Best HMM Match : ANF_receptor (HMM E-Value=0)                27   7.1  
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.1  
SB_15990| Best HMM Match : zf-CCCH (HMM E-Value=4.1)                   27   9.4  
SB_4198| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  
SB_9494| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  

>SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1066

 Score =  172 bits (418), Expect = 2e-43
 Identities = 87/161 (54%), Positives = 108/161 (67%)
 Frame = +1

Query: 1   IDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPIS 180
           IDI  KH +K  R E  SQ++               TNAKFNQIV++RL MSR  RPP+S
Sbjct: 110 IDIEKKHPKKNYRREPVSQNVYIRLLVKLYRFLSRRTNAKFNQIVMKRLCMSRTKRPPLS 169

Query: 181 VSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILT 360
           ++RL R MK    +  I VVVG++T+D R++++P + + AL  +E ARARIL AGGEILT
Sbjct: 170 LARLVRKMKASGHKDKICVVVGSITDDKRIFEVPALKICALRFSETARARILKAGGEILT 229

Query: 361 FDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHT 483
           FDQLALRAP G+ TVL+QG R AREA RH G APG P S T
Sbjct: 230 FDQLALRAPLGQNTVLLQGPRKAREAERHMGLAPGVPHSDT 270


>SB_49884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -3

Query: 387 RSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRY 277
           R+ +S L+ S+N   ++QNA T+FF + K  H +  Y
Sbjct: 16  RANESTLLTSENNDIANQNADTAFFTSKKKRHNNNSY 52


>SB_426| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)
          Length = 998

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 311 VT*RAATVIFGILYSLTSFVTVPTTTAIKPSR 216
           +T R  T++FGIL  L +     TT  IKP R
Sbjct: 616 ITLRPITILFGILALLLNLFVFVTTVGIKPLR 647


>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 22/79 (27%), Positives = 36/79 (45%)
 Frame = +1

Query: 184 SRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTF 363
           SRL   MK PT++G+   V   V+      +   +T A     E+ RAR+L   G +   
Sbjct: 92  SRLYEEMKHPTQDGMFVAVNSEVSVTFVGKEKEDVTFAKCAWFER-RARMLKGFGFVTFR 150

Query: 364 DQLALRAPTGKKTVLVQGQ 420
           D   + +   KK  ++ G+
Sbjct: 151 DPATIESVLAKKPHILDGK 169


>SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1202

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 346 GEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRS 477
           GE+++ D++  +A   +       Q N  EA R F P PG P S
Sbjct: 614 GEMMSDDEMKPKARCKRSQSTPIHQENREEAHRPFTPQPGRPLS 657


>SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 290 RWLLFMLPKKLVHAFWLLEEKFLLLISWLFVLRLARRQYW 409
           RWL ++  + L H  WL   ++L  +SWL+ +R      W
Sbjct: 19  RWLNYV--RWLYHVRWLYHVRWLYHVSWLYHVRWLYHVRW 56


>SB_48685| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 246

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 380 VLRLARRQYWYKVSEMLVRQCVTLALLQEHRALTLNPMFAPR 505
           V+R   R+ W K  +++V  CV LA++     L +  +F  R
Sbjct: 34  VIRNVHREGWQKSRDLIVLNCVLLAVIMLCAMLLIAVIFCRR 75


>SB_24186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 246

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 380 VLRLARRQYWYKVSEMLVRQCVTLALLQEHRALTLNPMFAPR 505
           V+R   R+ W K  +++V  CV LA++     L +  +F  R
Sbjct: 34  VIRNVHREGWQKSRDLIVLNCVLLAVIMLCAMLLIAVIFCRR 75


>SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1207

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +1

Query: 334 LAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFG 453
           LA  G   T        PT  +T+ + GQ   R A+R FG
Sbjct: 856 LATSGNTSTTISDNTATPTSSRTMQIPGQTQGRVALREFG 895


>SB_41995| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 785

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 243 HYHGNQTLTSWLLHVARQTRHRDWW 169
           HYH N+ L  +L  ++R      WW
Sbjct: 342 HYHSNEVLKDYLEMLSRTGPRHGWW 366


>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -3

Query: 465  SWSRAKVTHCLTSISLTLYQY 403
            +W RAKV HC +S S+T+ QY
Sbjct: 2539 TWYRAKVLHCDSSFSITV-QY 2558


>SB_15990| Best HMM Match : zf-CCCH (HMM E-Value=4.1)
          Length = 236

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 30  SSAHRS*ISRYLLEVTCKALQILGQT 107
           ++ HR  ++RY+   TC  L + G T
Sbjct: 84  ATCHRQHVTRYMSHATCHTLHVTGNT 109


>SB_4198| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1001

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 234 GNQTLTSWLLHVARQTRHRDWWP 166
           G  T + W LH ++Q RH+  WP
Sbjct: 177 GIDTGSLWQLHYSQQWRHKGRWP 199


>SB_9494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 670

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -2

Query: 436 PHEHFADLVPVLSSCQSEHEEPADQK*EFLLQQPKCVHELFR*HEEQP 293
           PHE   +LVP L   + E EE  D + E  L++P  V +    H  +P
Sbjct: 619 PHEPHFELVPPLKKPRCESEE--DDEEEHDLKRPSVVDDTELVHPTEP 664


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,456,206
Number of Sequences: 59808
Number of extensions: 378957
Number of successful extensions: 1064
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)