Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303A03f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)             297   3e-81
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)       210   4e-55
SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)    52   4e-07
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)                   31   0.58 
SB_39055| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   2.3  
SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_59547| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023)              27   7.1  
SB_53910| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42)           27   9.4  

>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score =  297 bits (730), Expect = 3e-81
 Identities = 135/173 (78%), Positives = 153/173 (88%)
 Frame = +3

Query: 3   KGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKF 182
           KGAGS+F SHTK RKGA  LR  DYAERHGYIKGVVK+IIHDPGRGAPLAVV FRDPY++
Sbjct: 10  KGAGSIFTSHTKHRKGAANLRVHDYAERHGYIKGVVKEIIHDPGRGAPLAVVVFRDPYRY 69

Query: 183 KTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARA 362
           K RKELF+A EG+YTGQF+YCGKKA L++GN +PVG MPEGTI+ ++EEK GDRGRLAR 
Sbjct: 70  KLRKELFVATEGMYTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLART 129

Query: 363 SGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKA 521
           SGN+ATVI HN + KRTRVKLPSG KKV+PSSNR +VGIVAGGGRIDKP+LKA
Sbjct: 130 SGNYATVISHNVEKKRTRVKLPSGIKKVIPSSNRALVGIVAGGGRIDKPMLKA 182


>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
          Length = 123

 Score =  210 bits (514), Expect = 4e-55
 Identities = 93/123 (75%), Positives = 109/123 (88%)
 Frame = +3

Query: 102 GVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVM 281
           GVVK+IIHDPGRGAPLAVV FRDPY++K RKELF+A EG+YTGQF+YCGKKA L++GN +
Sbjct: 1   GVVKEIIHDPGRGAPLAVVVFRDPYRYKLRKELFVATEGMYTGQFIYCGKKAALQIGNCL 60

Query: 282 PVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSN 461
           PVG MPEGTI+ ++EEK GDRGRLAR SGN+ATVI HN + KRTRVKLPSG KKV+PSSN
Sbjct: 61  PVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNVEKKRTRVKLPSGIKKVIPSSN 120

Query: 462 RGM 470
           R +
Sbjct: 121 RAL 123


>SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)
          Length = 222

 Score = 51.6 bits (118), Expect = 4e-07
 Identities = 47/147 (31%), Positives = 73/147 (49%), Gaps = 5/147 (3%)
 Frame = +3

Query: 96  IKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYC--GKK---AT 260
           IK  V  + +DP R A +A+V          +++L IAP+ +  G  +    GK    A 
Sbjct: 56  IKDKVLQVGYDPCRSARIALVAGNG----SNQEKLVIAPDEIQVGDVMTASRGKPESLAL 111

Query: 261 LEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAK 440
           L+ G+  P+  +P GT+V N+E   G   +LARA+G  A +I    +     V+LPS  +
Sbjct: 112 LKPGDAYPLCFLPIGTVVHNIELYPGKGAQLARAAGTSAQLIRKTNET--AVVRLPSKVE 169

Query: 441 KVLPSSNRGMVGIVAGGGRIDKPILKA 521
           K + S     VG V+   R ++ I KA
Sbjct: 170 KEVSSKCLASVGRVSNIERKNRVIGKA 196


>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
          Length = 1819

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -2

Query: 490 PPATIPTMPLLLDGRTFLAPDGSFT 416
           P AT   + L+LD  TFL PDGS T
Sbjct: 135 PAATTTYLNLILDSETFLEPDGSAT 159


>SB_39055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 448

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
 Frame = -1

Query: 410 TLSIRIVSNHSGEVSRGTCQTTSITHFLFKIAHNG--TLRHSSNRHHISNFKSCFLSTIN 237
           T SI ++ + +   + GTC+     +  FK+ H     + H  + H ++N   C +  ++
Sbjct: 76  THSILVLLSAAACAANGTCEEPRRRNTFFKLKHKDRMLIDHVISSHDVTNPIHCSMECLS 135

Query: 236 KLACVEPFGSNEELLP 189
              CV  F   +++ P
Sbjct: 136 NQRCVS-FNLKKQITP 150


>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2323

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 351  LARASGNF--ATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGI 479
            +AR +G+F   T +    D  RTR   P   KKVL ++N G + I
Sbjct: 1469 IARRTGSFDNLTSMLRLQDTPRTRTLAPISVKKVLTATNPGQLAI 1513


>SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 18/63 (28%), Positives = 33/63 (52%)
 Frame = -2

Query: 331  FSSRLHTMVPSGIAPTGITFPTSRVAFFPQ*TNWPV*SPSGAMKSSFLVLNLYGSRKCTT 152
            F+S L T +P+   P G+TF T +V F    +NW + + SG + +   ++ +  S +   
Sbjct: 1067 FNSELVTSLPT---PPGLTFTTYKVVFLE--SNWRIGNTSGRVATDKELVRVLSSLEYLW 1121

Query: 151  AKG 143
             +G
Sbjct: 1122 IRG 1124


>SB_59547| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1516

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 180 TCMDRGSVQQPKVHLYQGHGLY 115
           T  D G +Q P  HLY+ HG Y
Sbjct: 515 TVTDIGDLQYPVFHLYKEHGWY 536


>SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 695

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -2

Query: 493 PPPATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPE 362
           PPP  IP + + + GR+F+    +  +V   SG  P+T+ K  E
Sbjct: 361 PPPIDIPNLMIPIRGRSFV----NDKIVEEKSGDSPLTIKKTSE 400


>SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1351

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 270 GNVMPVGAMPEGTIVCNLEEKMGDRGRLAR-ASGNFATVIG 389
           G+  PV  +P G  +C   + +G R   AR   G F ++ G
Sbjct: 737 GHSKPVDGLPRGDAICGCPKAIGRRHARARLLEGRFLSISG 777


>SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023)
          Length = 565

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 146 FGCCTLPRSIQVQDK 190
           FGCC +P ++  QDK
Sbjct: 182 FGCCVMPNAVHCQDK 196


>SB_53910| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 419 YSCTLSIRIVSNHSGEVSRG 360
           Y+CTL+I +   H GE+ RG
Sbjct: 11  YACTLNINVGVKHPGEMFRG 30


>SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42)
          Length = 426

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -2

Query: 514 KIGLS-IRPPPATI--PTMPLLLDGRTFLAPDGSFT 416
           ++GLS I+PPP  +  PT+P +  G     P GS T
Sbjct: 237 RLGLSNIKPPPPPVPPPTIPSVPPGSETYVPPGSAT 272


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,038,624
Number of Sequences: 59808
Number of extensions: 401795
Number of successful extensions: 1046
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)