Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303A03f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical pr...   281   2e-76
AF045646-7|AAK29833.2|  321|Caenorhabditis elegans Hypothetical ...    36   0.018
Z81589-11|CAI58924.1|  330|Caenorhabditis elegans Hypothetical p...    28   3.5  
Z81555-8|CAB04512.2|  330|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z99281-24|CAE18027.1|  155|Caenorhabditis elegans Hypothetical p...    28   4.7  
AF220526-1|AAF43009.1|  332|Caenorhabditis elegans DNAse II homo...    27   6.2  
L11247-6|AAA28005.2|  367|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical
           protein B0250.1 protein.
          Length = 260

 Score =  281 bits (689), Expect = 2e-76
 Identities = 121/173 (69%), Positives = 148/173 (85%)
 Frame = +3

Query: 3   KGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKF 182
           KGAG +F SH K RKGA KLR LDYAERHGYIKG+VKDIIHDPGRGAPLA++ FRDPYK+
Sbjct: 10  KGAGGIFKSHNKHRKGASKLRPLDYAERHGYIKGLVKDIIHDPGRGAPLAIIAFRDPYKY 69

Query: 183 KTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARA 362
           KT K   +A EG++TGQF++CG KA +++GN++PVG +PEGT +CN+E K GDRG +ARA
Sbjct: 70  KTVKTTVVAAEGMHTGQFIHCGAKAQIQIGNIVPVGTLPEGTTICNVENKSGDRGVIARA 129

Query: 363 SGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKA 521
           SGN+ATVI HNPD K+TR++LPSGAKKV+ S NR M+G+VAGGGR DKP+LKA
Sbjct: 130 SGNYATVIAHNPDTKKTRIRLPSGAKKVVQSVNRAMIGLVAGGGRTDKPLLKA 182


>AF045646-7|AAK29833.2|  321|Caenorhabditis elegans Hypothetical
           protein F56B3.8 protein.
          Length = 321

 Score = 35.9 bits (79), Expect = 0.018
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +3

Query: 270 GNVMPVGAMPEGTIVCNLEE-KMGDRGRLARASGNFATVIGHNPDAKRTRVKLP 428
           GN  P+G++  GT++ ++E     D     +A+G  AT++ H  D   T VKLP
Sbjct: 160 GNAYPIGSLAAGTVINSIERYPTMDSETFVKAAGTSATIVRHQGDF--TVVKLP 211


>Z81589-11|CAI58924.1|  330|Caenorhabditis elegans Hypothetical
           protein F58E10.6 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 87  HGYIKGVVKDIIHDPGRGAPLAVVHFR 167
           HG +  +V  I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311


>Z81555-8|CAB04512.2|  330|Caenorhabditis elegans Hypothetical
           protein F58E10.6 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 87  HGYIKGVVKDIIHDPGRGAPLAVVHFR 167
           HG +  +V  I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311


>Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical
           protein T24B8.1 protein.
          Length = 134

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +3

Query: 384 IGHNPDAKRTRVKLPSGAKKVL 449
           IGH  D +RTR  LP+G KKVL
Sbjct: 57  IGHGSD-RRTRFVLPNGYKKVL 77


>Z99281-24|CAE18027.1|  155|Caenorhabditis elegans Hypothetical
           protein Y57G11C.44 protein.
          Length = 155

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 24  VSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPL 149
           +S  ++RK +     LD+++  G  K ++KDI +D  +  P+
Sbjct: 1   MSEVRQRKSSIIDSDLDFSDSDGEFKEIIKDIENDQWKDKPV 42


>AF220526-1|AAF43009.1|  332|Caenorhabditis elegans DNAse II homolog
           F09G8.2 protein.
          Length = 332

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 23/87 (26%), Positives = 40/87 (45%)
 Frame = -1

Query: 452 WQNLLGSRR*LYSCTLSIRIVSNHSGEVSRGTCQTTSITHFLFKIAHNGTLRHSSNRHHI 273
           W +L+  +      TL++    N SG+    TC +TS TH + ++   G L  +S++ H 
Sbjct: 209 WNDLISRQN---KVTLAVESWLNGSGDDIHTTCTSTSQTHDVTEMRVTG-LNFASSKDH- 263

Query: 272 SNFKSCFLSTINKLACVEPFGSNEELL 192
           S + +   S  N + C E     +  L
Sbjct: 264 SKW-AVSNSQTNPIVCFEDMNRQKSQL 289


>L11247-6|AAA28005.2|  367|Caenorhabditis elegans Hypothetical
           protein F09G8.2 protein.
          Length = 367

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = -1

Query: 452 WQNLLGSRR*LYSCTLSIRIVSNHSGEVSRGTCQTTSITHFLFKIAHNGTLRHSSNRHH 276
           W +L+  +      TL++    N SG+    TC +TS TH + ++   G L  +S++ H
Sbjct: 234 WNDLISRQN---KVTLAVESWLNGSGDDIHTTCTSTSQTHDVTEMRVTG-LNFASSKDH 288


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,192,251
Number of Sequences: 27780
Number of extensions: 302986
Number of successful extensions: 797
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)