Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303A03f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) 263 6e-71
At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) riboso... 258 2e-69
At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) riboso... 255 2e-68
At2g44065.2 68415.m05480 ribosomal protein L2 family protein sim... 52 3e-07
At2g44065.1 68415.m05479 ribosomal protein L2 family protein sim... 52 3e-07
At3g27500.1 68416.m03438 DC1 domain-containing protein contains ... 32 0.20
At4g00450.1 68417.m00062 expressed protein 30 1.1
At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plast... 27 5.8
At3g12000.1 68416.m01486 S-locus related protein SLR1, putative ... 27 5.8
At2g22730.1 68415.m02694 transporter-related low similarity to s... 27 5.8
At3g45860.1 68416.m04963 receptor-like protein kinase, putative ... 27 7.7
At2g42730.1 68415.m05292 F-box family protein contains F-box dom... 27 7.7
At2g40770.1 68415.m05030 SNF2 domain-containing protein / helica... 27 7.7
At2g02610.1 68415.m00200 DC1 domain-containing protein contain... 27 7.7
At1g70380.1 68414.m08096 F-box family protein contains Pfam PF00... 27 7.7
At1g53170.1 68414.m06025 ethylene-responsive element-binding fac... 27 7.7
At1g44130.1 68414.m05097 nucellin protein, putative similar to n... 27 7.7
>At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A)
Length = 258
Score = 263 bits (644), Expect = 6e-71
Identities = 118/173 (68%), Positives = 145/173 (83%)
Frame = +3
Query: 3 KGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKF 182
KGAGSVF SHT RKG K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA V FR P++F
Sbjct: 10 KGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLARVTFRHPFRF 69
Query: 183 KTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARA 362
K +KELF+A EG+YTGQF+YCGKKATL VGNV+P+ ++PEG +VCN+E +GDRG LARA
Sbjct: 70 KKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVLARA 129
Query: 363 SGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKA 521
SG++A VI HNPD+ TR+KLPSG+KK++PS R M+G VAGGGR +KP+LKA
Sbjct: 130 SGDYAIVIAHNPDSDTTRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKA 182
>At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) ribosomal
protein L8, cytosolic, tomato, PIR1:R5TOL8
Length = 258
Score = 258 bits (632), Expect = 2e-69
Identities = 115/173 (66%), Positives = 143/173 (82%)
Frame = +3
Query: 3 KGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKF 182
KGAGSVF SHT RKG K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA V FR P++F
Sbjct: 10 KGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLARVAFRHPFRF 69
Query: 183 KTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARA 362
K +KELF+A EG+YTGQF+YCGKKATL VGNV+P+ ++PEG ++CN+E +GDRG ARA
Sbjct: 70 KKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARA 129
Query: 363 SGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKA 521
SG++A VI HNPD +R+KLPSG+KK++PS R M+G VAGGGR +KP+LKA
Sbjct: 130 SGDYAIVIAHNPDNDTSRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKA 182
>At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) ribosomal
protein L8, cytosolic - Arabidopsis thaliana, PIR:T04582
Length = 260
Score = 255 bits (624), Expect = 2e-68
Identities = 113/171 (66%), Positives = 142/171 (83%)
Frame = +3
Query: 9 AGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKT 188
AGSVF SHT RKG K RSLDY ER+GY+KG+V +IIHDPGRGAPLA V FR P+++
Sbjct: 13 AGSVFKSHTHHRKGPAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLARVAFRHPFRYMK 72
Query: 189 RKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASG 368
+KELF+A EG+YTGQ++YCGKKA L VGNV+P+G++PEG ++CN+E +GDRG LARASG
Sbjct: 73 QKELFVAAEGMYTGQYLYCGKKANLMVGNVLPLGSIPEGAVICNVELHVGDRGALARASG 132
Query: 369 NFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKA 521
++A VI HNP++ TRVKLPSG+KK+LPS+ R M+G VAGGGR +KP LKA
Sbjct: 133 DYAIVIAHNPESNTTRVKLPSGSKKILPSACRAMIGQVAGGGRTEKPFLKA 183
>At2g44065.2 68415.m05480 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 51.6 bits (118), Expect = 3e-07
Identities = 28/85 (32%), Positives = 45/85 (52%)
Frame = +3
Query: 267 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 446
+G+ MP+G M GTI+ N+E G ++ RA+G A ++ P + +KLPSG K
Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117
Query: 447 LPSSNRGMVGIVAGGGRIDKPILKA 521
+ + R +G V+ K + KA
Sbjct: 118 INAKCRATIGTVSNPSHGTKKLYKA 142
>At2g44065.1 68415.m05479 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 51.6 bits (118), Expect = 3e-07
Identities = 28/85 (32%), Positives = 45/85 (52%)
Frame = +3
Query: 267 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 446
+G+ MP+G M GTI+ N+E G ++ RA+G A ++ P + +KLPSG K
Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117
Query: 447 LPSSNRGMVGIVAGGGRIDKPILKA 521
+ + R +G V+ K + KA
Sbjct: 118 INAKCRATIGTVSNPSHGTKKLYKA 142
>At3g27500.1 68416.m03438 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 609
Score = 32.3 bits (70), Expect = 0.20
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -1
Query: 326 FKIAHNGTLRHSSNRH-HISNFKSCFLSTINKLACVEPFGSNEELLPCLELVWI 168
FK + T+ H S+RH H+S K S+ K AC P GS+ L C E +I
Sbjct: 363 FKRNDDNTIDHFSHRHNHMSLDKGGEESSFCK-ACAHPIGSSSSLYKCSECSFI 415
>At4g00450.1 68417.m00062 expressed protein
Length = 2124
Score = 29.9 bits (64), Expect = 1.1
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = -1
Query: 338 THFLFKIAHNGTLRHSSNRHHISNFKSCFLSTINKLACV-EPFGSNEELLPCLELVWIAE 162
TH+L K+ GT++ S + ++ + + C+ + G+ +E P L ++
Sbjct: 1149 THYLKKLIGTGTMKASLAEKNDDGYQVAQQIVVGLMDCIRQTGGAAQEGDPSLVSSAVSA 1208
Query: 161 VYNSQRCTSTRVMDYILNN 105
+ NS + R+ D+ L N
Sbjct: 1209 IINSVGLSVARITDFSLGN 1227
>At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1,
plastidic / lipoamide dehydrogenase 1 (PTLPD1) identical
to plastidic lipoamide dehydrogenase from Arabidopsis
thaliana [gi:7159282]
Length = 570
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -1
Query: 377 GEVSRGTCQTTSITHFLFKIAHNGTLRHSSNRHHISNF 264
G+V GTC +A +G +R N HH+ +F
Sbjct: 117 GDVVGGTCVNRGCVPSKALLAVSGRMRELQNEHHMKSF 154
>At3g12000.1 68416.m01486 S-locus related protein SLR1, putative
(S1) identical to S-locus related protein SLR1 homolog
(AtS1) GI:246209 Arabidopsis thaliana]; contains Pfam
profiles PF01453: Lectin (probable mannose binding),
PF00954: S-locus glycoprotein family
Length = 439
Score = 27.5 bits (58), Expect = 5.8
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = -1
Query: 518 FQNRFVNTSTSSNNTDHASVA*WQNLLGSRR*LYSCTLSIRIVSNHSGEVSRGTCQTTSI 339
F+ F T+TSS N DH + W + R ++ V+N +S+ + T I
Sbjct: 56 FELGFFKTTTSSRNGDHWYLGIWYKSISERTYVW--------VANRDNPLSK-SIGTLKI 106
Query: 338 THF-LFKIAHNGTLRHSSN 285
++ L + H+GTL S+N
Sbjct: 107 SYANLVLLDHSGTLVWSTN 125
>At2g22730.1 68415.m02694 transporter-related low similarity to
spinster membrane proteins from [Drosophila
melanogaster] GI:12003974, GI:12003976, GI:12003972,
GI:12003970; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 510
Score = 27.5 bits (58), Expect = 5.8
Identities = 24/79 (30%), Positives = 31/79 (39%)
Frame = -2
Query: 484 ATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSSRLHTMV 305
ATIP LL G TFL FT L S I + E +P+ LH +
Sbjct: 361 ATIPNAFKLLSGATFLGAVFCFTAFTLKSLYGFIALFALGELLVFATQAPVNYVCLHCVK 420
Query: 304 PSGIAPTGITFPTSRVAFF 248
PS + P + T + F
Sbjct: 421 PS-LRPLSMAISTVAIHIF 438
>At3g45860.1 68416.m04963 receptor-like protein kinase, putative
similar to receptor-like protein kinase 4 (gi:13506745),
5 (gi:13506747), and 6 (gi:13506749) from Arabidopsis
thaliana; contains Pfam protein kinase domain PF00069
Length = 676
Score = 27.1 bits (57), Expect = 7.7
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = -1
Query: 347 TSITHFLFKIAHNGTLRHSSNRHHISNFKSCFLSTINKLACVEPFGSNEE 198
+++T+ I NG SSN++ + F+ ST+N LA VE S+++
Sbjct: 137 STVTYDGSAILLNGANISSSNQNQVDEFRDLVSSTLN-LAAVEAANSSKK 185
>At2g42730.1 68415.m05292 F-box family protein contains F-box domain
Pfam:PF00646
Length = 737
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = -1
Query: 200 ELLPCLELVWIAEVYNSQRCTSTRVM 123
E LPCLELV I V NS +T M
Sbjct: 408 EKLPCLELVKICVVNNSNNLQTTMEM 433
>At2g40770.1 68415.m05030 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger (C3HC4 type RING
finger) family protein low similarity to SP|P36607 DNA
repair protein rad8 {Schizosaccharomyces pombe};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00628: PHD-finger, PF00097: Zinc finger, C3HC4
type (RING finger)
Length = 1648
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 402 HQDCVQSQWRSFQRHVPDDLYHPFSLQDCTQW 307
H+ Q WRS + HV D+L P ++C W
Sbjct: 667 HKFFKQVMWRSSKVHVADELQLP-PQEECVSW 697
>At2g02610.1 68415.m00200 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 627
Score = 27.1 bits (57), Expect = 7.7
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -1
Query: 323 KIAHNGTLRHSSNRHHIS-NFKSCFLSTINKLACVEPFGSNEELLPCLELVWI 168
KIA NG + H S+RHH+ + F+ ACV P + C+E +I
Sbjct: 339 KIA-NGVILHFSHRHHLKFDISGVFVGNKFCQACVLPINEG-NVYVCVECDFI 389
>At1g70380.1 68414.m08096 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
protein interaction domain
Length = 377
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +3
Query: 204 IAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 335
+ EGL+ G F+Y G +++ VM E V L E++
Sbjct: 209 VTDEGLFNGGFLYYGARSSCNKPMVMRFNVSSEAFAVIKLPEEV 252
>At1g53170.1 68414.m06025 ethylene-responsive element-binding factor
8 / ERF transcription factor 8 (ERF8) identical to ERF
transcription factor 8 GI:10567108 from [Arabidopsis
thaliana]
Length = 185
Score = 27.1 bits (57), Expect = 7.7
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +3
Query: 348 RLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPI 512
R +A NF ++G +P T V P+ A+ + P +G GGG + I
Sbjct: 78 RGVKAKTNFGVIVGSSPTQSSTVVDSPTAARFITPPHLELSLG---GGGACRRKI 129
>At1g44130.1 68414.m05097 nucellin protein, putative similar to
nucellin GI:2290202 from [Hordeum vulgare]
Length = 405
Score = 27.1 bits (57), Expect = 7.7
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Frame = +2
Query: 131 W*RCTFGC--CTLPRSIQVQDKEGALHCSR---RALHRP 232
W +C C CTLP ++Q + K + CS ALH P
Sbjct: 74 WVQCDAPCSGCTLPPNLQYKPKGNIIPCSNPICTALHWP 112
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,561,281
Number of Sequences: 28952
Number of extensions: 278178
Number of successful extensions: 799
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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