Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303A02f
(521 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62888 Cluster: 60S ribosomal protein L30; n=127; Eukar... 53 3e-06
UniRef50_P58374 Cluster: 60S ribosomal protein L30; n=20; Eukary... 50 2e-05
UniRef50_P14120 Cluster: 60S ribosomal protein L30; n=6; Eukaryo... 50 3e-05
UniRef50_P49153 Cluster: 60S ribosomal protein L30; n=15; Eukary... 48 1e-04
UniRef50_Q8VZ19 Cluster: 60S ribosomal protein L30-2; n=34; Euka... 45 0.001
UniRef50_A0BYD7 Cluster: Chromosome undetermined scaffold_137, w... 42 0.006
UniRef50_Q9XG43 Cluster: 60S ribosomal protein L30; n=1; Guillar... 42 0.011
UniRef50_A2DH05 Cluster: 60S ribosomal protein L30, putative; n=... 42 0.011
UniRef50_Q9YAU3 Cluster: 50S ribosomal protein L30e; n=1; Aeropy... 40 0.026
UniRef50_Q7QQS4 Cluster: GLP_24_9208_8879; n=1; Giardia lamblia ... 39 0.060
UniRef50_O28389 Cluster: 50S ribosomal protein L30e; n=1; Archae... 38 0.14
UniRef50_Q8U0M6 Cluster: 50S ribosomal protein L30e; n=3; Pyroco... 34 2.3
UniRef50_Q8TXJ0 Cluster: 50S ribosomal protein L30e; n=6; Archae... 34 2.3
UniRef50_P54061 Cluster: 50S ribosomal protein L30e; n=8; Archae... 34 2.3
UniRef50_Q8SRU1 Cluster: 60S RIBOSOMAL PROTEIN L30; n=1; Encepha... 33 3.0
UniRef50_Q8ZYQ6 Cluster: 50S ribosomal protein L30e; n=4; Thermo... 33 3.0
UniRef50_Q23YQ7 Cluster: Putative uncharacterized protein; n=1; ... 33 4.0
UniRef50_Q41A26 Cluster: Ribosomal protein L7Ae/L30e/S12e/Gadd45... 33 5.2
UniRef50_O27127 Cluster: 50S ribosomal protein L30e; n=4; Euryar... 33 5.2
UniRef50_Q6D9G6 Cluster: Putative DNA mismatch repair protein; n... 32 6.9
UniRef50_Q0W8G7 Cluster: 50S ribosomal protein L30E; n=1; uncult... 32 9.2
>UniRef50_P62888 Cluster: 60S ribosomal protein L30; n=127;
Eukaryota|Rep: 60S ribosomal protein L30 - Homo sapiens
(Human)
Length = 115
Score = 53.2 bits (122), Expect = 3e-06
Identities = 24/31 (77%), Positives = 26/31 (83%)
Frame = +2
Query: 140 KYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 232
KY LGYKQTLK +RQGKAKLVI+A N P LR
Sbjct: 26 KYVLGYKQTLKMIRQGKAKLVILANNCPALR 56
Score = 48.0 bits (109), Expect = 1e-04
Identities = 27/45 (60%), Positives = 32/45 (71%)
Frame = +1
Query: 64 MVAAKKQKKTIESINSRLALVMKSGKILLRIQANFENSSTRQSKA 198
MVAAKK KK++ESINSRL LVMKSGK +L + + RQ KA
Sbjct: 1 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLK--MIRQGKA 43
>UniRef50_P58374 Cluster: 60S ribosomal protein L30; n=20;
Eukaryota|Rep: 60S ribosomal protein L30 - Branchiostoma
belcheri (Amphioxus)
Length = 114
Score = 50.4 bits (115), Expect = 2e-05
Identities = 23/31 (74%), Positives = 25/31 (80%)
Frame = +2
Query: 140 KYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 232
KY LG K+TLK LRQGKAKL+IIA N P LR
Sbjct: 23 KYVLGLKETLKVLRQGKAKLIIIANNTPALR 53
Score = 41.1 bits (92), Expect = 0.015
Identities = 22/41 (53%), Positives = 30/41 (73%)
Frame = +1
Query: 76 KKQKKTIESINSRLALVMKSGKILLRIQANFENSSTRQSKA 198
K+++KT+ESINSRL LVMKSGK +L ++ + RQ KA
Sbjct: 2 KQKRKTMESINSRLQLVMKSGKYVLGLKETLK--VLRQGKA 40
>UniRef50_P14120 Cluster: 60S ribosomal protein L30; n=6;
Eukaryota|Rep: 60S ribosomal protein L30 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 105
Score = 50.0 bits (114), Expect = 3e-05
Identities = 22/31 (70%), Positives = 26/31 (83%)
Frame = +2
Query: 140 KYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 232
KY LGYK T+K+LRQGK+KL+IIA N P LR
Sbjct: 22 KYTLGYKSTVKSLRQGKSKLIIIAANTPVLR 52
>UniRef50_P49153 Cluster: 60S ribosomal protein L30; n=15;
Eukaryota|Rep: 60S ribosomal protein L30 - Trypanosoma
brucei brucei
Length = 105
Score = 48.4 bits (110), Expect = 1e-04
Identities = 20/31 (64%), Positives = 27/31 (87%)
Frame = +2
Query: 140 KYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 232
KY LG +Q+LKTLRQG++KLV+I+ N PP+R
Sbjct: 24 KYVLGTQQSLKTLRQGRSKLVVISANCPPIR 54
Score = 36.3 bits (80), Expect = 0.43
Identities = 17/41 (41%), Positives = 27/41 (65%)
Frame = +1
Query: 73 AKKQKKTIESINSRLALVMKSGKILLRIQANFENSSTRQSK 195
AKK K +++IN+++ LVMKSGK +L Q + + +SK
Sbjct: 2 AKKVKSKVDTINTKIQLVMKSGKYVLGTQQSLKTLRQGRSK 42
>UniRef50_Q8VZ19 Cluster: 60S ribosomal protein L30-2; n=34;
Eukaryota|Rep: 60S ribosomal protein L30-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 112
Score = 45.2 bits (102), Expect = 0.001
Identities = 19/31 (61%), Positives = 23/31 (74%)
Frame = +2
Query: 140 KYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 232
KY LGYK LK+LR K KL++I+ N PPLR
Sbjct: 26 KYTLGYKSVLKSLRGSKGKLILISTNCPPLR 56
Score = 41.1 bits (92), Expect = 0.015
Identities = 21/29 (72%), Positives = 22/29 (75%)
Frame = +1
Query: 64 MVAAKKQKKTIESINSRLALVMKSGKILL 150
MV KK KK+ E INSRLALVMKSGK L
Sbjct: 1 MVTEKKTKKSHEGINSRLALVMKSGKYTL 29
>UniRef50_A0BYD7 Cluster: Chromosome undetermined scaffold_137,
whole genome shotgun sequence; n=5; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_137,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 201
Score = 42.3 bits (95), Expect = 0.006
Identities = 18/31 (58%), Positives = 22/31 (70%)
Frame = +2
Query: 140 KYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 232
K +GYKQTLK +R G AKLV I+ N P +R
Sbjct: 22 KITMGYKQTLKAIRNGTAKLVFISNNCPTIR 52
>UniRef50_Q9XG43 Cluster: 60S ribosomal protein L30; n=1; Guillardia
theta|Rep: 60S ribosomal protein L30 - Guillardia theta
(Cryptomonas phi)
Length = 107
Score = 41.5 bits (93), Expect = 0.011
Identities = 18/31 (58%), Positives = 21/31 (67%)
Frame = +2
Query: 140 KYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 232
K+ GYK TLK LR GK K++II N PLR
Sbjct: 25 KFSYGYKATLKNLRSGKCKMIIITDNCIPLR 55
>UniRef50_A2DH05 Cluster: 60S ribosomal protein L30, putative; n=5;
Eukaryota|Rep: 60S ribosomal protein L30, putative -
Trichomonas vaginalis G3
Length = 112
Score = 41.5 bits (93), Expect = 0.011
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = +2
Query: 140 KYCLGYKQTLKTLRQGKAKLVIIAKNAPP 226
KY LG QTLK+LR G+AKLVI A N P
Sbjct: 25 KYSLGISQTLKSLRNGEAKLVIFASNVAP 53
>UniRef50_Q9YAU3 Cluster: 50S ribosomal protein L30e; n=1; Aeropyrum
pernix|Rep: 50S ribosomal protein L30e - Aeropyrum
pernix
Length = 100
Score = 40.3 bits (90), Expect = 0.026
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +2
Query: 143 YCLGYKQTLKTLRQGKAKLVIIAKNAPP 226
Y +G+KQ+LK ++ G+AK ++IA+N PP
Sbjct: 16 YAMGFKQSLKAVKAGEAKAIVIAENTPP 43
>UniRef50_Q7QQS4 Cluster: GLP_24_9208_8879; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_24_9208_8879 - Giardia lamblia ATCC
50803
Length = 109
Score = 39.1 bits (87), Expect = 0.060
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +2
Query: 140 KYCLGYKQTLKTLRQGKAKLVIIAKNAPPL 229
KY LG Q ++ +R GKA+LV +A N PPL
Sbjct: 26 KYTLGTDQAIRNIRDGKAQLVFMANNCPPL 55
>UniRef50_O28389 Cluster: 50S ribosomal protein L30e; n=1;
Archaeoglobus fulgidus|Rep: 50S ribosomal protein L30e -
Archaeoglobus fulgidus
Length = 86
Score = 37.9 bits (84), Expect = 0.14
Identities = 17/27 (62%), Positives = 20/27 (74%)
Frame = +2
Query: 143 YCLGYKQTLKTLRQGKAKLVIIAKNAP 223
Y LG K TLK+LR G+AK VI+A N P
Sbjct: 17 YRLGSKSTLKSLRNGEAKAVIVASNCP 43
>UniRef50_Q8U0M6 Cluster: 50S ribosomal protein L30e; n=3;
Pyrococcus|Rep: 50S ribosomal protein L30e - Pyrococcus
furiosus
Length = 99
Score = 33.9 bits (74), Expect = 2.3
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +2
Query: 140 KYCLGYKQTLKTLRQGKAKLVIIAKNAP 223
K LG +T++ + G AKL+I+AKNAP
Sbjct: 15 KVVLGSNETIRLAKTGGAKLIIVAKNAP 42
>UniRef50_Q8TXJ0 Cluster: 50S ribosomal protein L30e; n=6;
Archaea|Rep: 50S ribosomal protein L30e - Methanopyrus
kandleri
Length = 109
Score = 33.9 bits (74), Expect = 2.3
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = +2
Query: 149 LGYKQTLKTLRQGKAKLVIIAKNAP 223
LG QT+K L+ GK KLVI+A N P
Sbjct: 19 LGSNQTIKLLKLGKPKLVIVAANCP 43
>UniRef50_P54061 Cluster: 50S ribosomal protein L30e; n=8;
Archaea|Rep: 50S ribosomal protein L30e - Methanococcus
jannaschii
Length = 110
Score = 33.9 bits (74), Expect = 2.3
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +2
Query: 83 RKRPSSQLTPALLW**NRAKYCLGYKQTLKTLRQGKAKLVIIAKNAP 223
R+R + + A+ + K LG K+T+K ++ G+ KLV++A N P
Sbjct: 2 RRRENMDVNKAIRTAVDTGKVILGSKRTIKFVKHGEGKLVVLAGNIP 48
>UniRef50_Q8SRU1 Cluster: 60S RIBOSOMAL PROTEIN L30; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L30
- Encephalitozoon cuniculi
Length = 108
Score = 33.5 bits (73), Expect = 3.0
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +2
Query: 77 RNRKRPSSQLTPALLW**NRAKYCLGYKQTLKTLRQGKAKLVIIAKNAP 223
R + +T +LL KY +G+K+ +K++ KAK ++I+ N P
Sbjct: 2 RGKSNKGDNVTSSLLLAMRTGKYIVGFKRAIKSVIMKKAKCLVISSNFP 50
>UniRef50_Q8ZYQ6 Cluster: 50S ribosomal protein L30e; n=4;
Thermoproteaceae|Rep: 50S ribosomal protein L30e -
Pyrobaculum aerophilum
Length = 102
Score = 33.5 bits (73), Expect = 3.0
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 131 NRAKYCLGYKQTLKTLRQGKAKLVIIAKNAP 223
N K +G+++T K L G KL+I+A NAP
Sbjct: 13 NTGKVVIGFEETKKALLTGAPKLIILAANAP 43
>UniRef50_Q23YQ7 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 562
Score = 33.1 bits (72), Expect = 4.0
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Frame = +1
Query: 34 EDLISIYAPKMVAAKKQKKTIESINSRLALVMKSGKILL-RIQANFENSSTRQSKAGYHR 210
++L SIYA K+ ++K + E+INS L + +S I L ++QA + + K R
Sbjct: 82 QELSSIYAQKIEVETQKKISQETINSNLKKMSQSNGIALPQLQAKIKQLEYKLEKT-RSR 140
Query: 211 *KCSSAKVRLLRSRVSQYLSKGCIWSLTDKEV 306
S A++ +L+ +V+ + I+S K++
Sbjct: 141 HNESLAQINMLKEQVNMARRERVIFSNVFKKL 172
>UniRef50_Q41A26 Cluster: Ribosomal protein L7Ae/L30e/S12e/Gadd45;
n=1; Exiguobacterium sibiricum 255-15|Rep: Ribosomal
protein L7Ae/L30e/S12e/Gadd45 - Exiguobacterium
sibiricum 255-15
Length = 96
Score = 32.7 bits (71), Expect = 5.2
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +2
Query: 149 LGYKQTLKTLRQGKAKLVIIAKNA 220
+G KQTLK LR GKA VIIA +A
Sbjct: 27 VGQKQTLKALRSGKASEVIIADDA 50
>UniRef50_O27127 Cluster: 50S ribosomal protein L30e; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L30e -
Methanobacterium thermoautotrophicum
Length = 98
Score = 32.7 bits (71), Expect = 5.2
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = +2
Query: 149 LGYKQTLKTLRQGKAKLVIIAKNAP 223
LG K+T+++L+ GK KLV++A N P
Sbjct: 18 LGSKRTIQSLKLGKGKLVVMASNIP 42
>UniRef50_Q6D9G6 Cluster: Putative DNA mismatch repair protein; n=2;
Gammaproteobacteria|Rep: Putative DNA mismatch repair
protein - Erwinia carotovora subsp. atroseptica
(Pectobacterium atrosepticum)
Length = 663
Score = 32.3 bits (70), Expect = 6.9
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = -2
Query: 496 QNSIKKRMQFNRIYNLSLKVN*KLFV--*KIHTPKKIAIPLTLFLVLVQFNLIFANCFTK 323
++SI K++Q N + LSL N KLF+ +I+ P ++I + + FN++F +K
Sbjct: 170 KDSIIKKLQNNFGWRLSLNKNRKLFLNDFEINVPLNVSIEKNIEVDKFTFNVLFIRWISK 229
Query: 322 P 320
P
Sbjct: 230 P 230
>UniRef50_Q0W8G7 Cluster: 50S ribosomal protein L30E; n=1;
uncultured methanogenic archaeon RC-I|Rep: 50S ribosomal
protein L30E - Uncultured methanogenic archaeon RC-I
Length = 101
Score = 31.9 bits (69), Expect = 9.2
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +2
Query: 140 KYCLGYKQTLKTLRQGKAKLVIIAKNAP 223
K +G KQ +K ++G AKLVI+A N P
Sbjct: 17 KVLIGTKQAVKASQRGVAKLVIVATNCP 44
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 495,066,773
Number of Sequences: 1657284
Number of extensions: 8892936
Number of successful extensions: 17865
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 17573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17864
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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