Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303A02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein L30|Sc...    56   2e-09
SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein L30|Sc...    54   1e-08
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch...    26   3.9  
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    26   3.9  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    25   6.8  

>SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 56.4 bits (130), Expect = 2e-09
 Identities = 25/31 (80%), Positives = 27/31 (87%)
 Frame = +2

Query: 140 KYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 232
           KY LGYK TLKTLR GKAKL++IA NAPPLR
Sbjct: 36  KYVLGYKSTLKTLRSGKAKLILIAANAPPLR 66



 Score = 39.1 bits (87), Expect = 4e-04
 Identities = 19/47 (40%), Positives = 31/47 (65%)
 Frame = +1

Query: 55  APKMVAAKKQKKTIESINSRLALVMKSGKILLRIQANFENSSTRQSK 195
           AP    +KK KK+ ++INS+LAL MKSGK +L  ++  +   + ++K
Sbjct: 8   APVAAVSKKGKKSGDTINSKLALTMKSGKYVLGYKSTLKTLRSGKAK 54


>SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 54.4 bits (125), Expect = 1e-08
 Identities = 24/31 (77%), Positives = 26/31 (83%)
 Frame = +2

Query: 140 KYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 232
           KY LGYK TLKTLR GKAKL++IA N PPLR
Sbjct: 28  KYVLGYKSTLKTLRSGKAKLILIAGNCPPLR 58



 Score = 36.7 bits (81), Expect = 0.002
 Identities = 17/43 (39%), Positives = 29/43 (67%)
 Frame = +1

Query: 67  VAAKKQKKTIESINSRLALVMKSGKILLRIQANFENSSTRQSK 195
           V  KK KK+ ++IN++LAL MKSGK +L  ++  +   + ++K
Sbjct: 4   VVTKKSKKSGDTINAKLALTMKSGKYVLGYKSTLKTLRSGKAK 46


>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 198

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +3

Query: 174 LFDKAKQSWLSSLKMLLR*GEATEK*SFPILV--KGMHMESY*QRSMDSLCGLVKQFAK 344
           +FD +++S L+S+K   R      K + PIL+  K  H  ++ +   + +    +++AK
Sbjct: 89  MFDLSRKSTLNSIKEWYRQARGFNKTAVPILIGTKYDHFMTFPREDQEEITKQARRYAK 147


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +2

Query: 131 NRAKYCL-GYKQTLKTLRQGKAKLVIIAKNAPPL 229
           ++ K+ L G K+ +K +R+G+  LVI+A +  P+
Sbjct: 49  SKQKHILRGVKEVVKAVRKGEKGLVILAGDISPM 82


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +1

Query: 202 YHR*KCSSAKVRLLRSRVSQYLSKGCIWSLTDKEVWIPFVV**NSSQK*G 351
           Y    CSS   ++L S +S+ L +  +W    K      V+   SSQ  G
Sbjct: 507 YRMSHCSSNSNKVLASEISESLRRDLLWERRQKAAMNSAVLRRQSSQSSG 556


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,151,876
Number of Sequences: 5004
Number of extensions: 41205
Number of successful extensions: 92
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)