Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303A02f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0300 + 23932947-23933196,23934022-23934123,23934249-239343...    50   9e-07
01_06_1103 - 34543915-34543955,34544069-34544137,34544294-345443...    50   1e-06
01_01_1199 - 9657169-9657254,9657369-9657395,9657485-9657553,965...    49   2e-06
12_01_0231 + 1744323-1745276,1745516-1746193                           28   5.2  
11_02_0014 - 7352619-7352918,7353173-7353418                           27   9.1  
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929...    27   9.1  

>05_05_0300 +
           23932947-23933196,23934022-23934123,23934249-23934317,
           23934406-23934446
          Length = 153

 Score = 50.4 bits (115), Expect = 9e-07
 Identities = 24/56 (42%), Positives = 31/56 (55%)
 Frame = +2

Query: 65  WLQQRNRKRPSSQLTPALLW**NRAKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 232
           W+    +K+ +  +   L       KY LGYK  LKTLR  K KL+I+A N PPLR
Sbjct: 42  WVVAMMQKKSTDNINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLIILANNCPPLR 97


>01_06_1103 -
           34543915-34543955,34544069-34544137,34544294-34544395,
           34545603-34545708,34545998-34546079,34546850-34547142
          Length = 230

 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 22/31 (70%), Positives = 23/31 (74%)
 Frame = +2

Query: 140 KYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 232
           KY LGYK  LKTLR  K KLVI+A N PPLR
Sbjct: 144 KYTLGYKTVLKTLRNSKGKLVIVANNCPPLR 174



 Score = 30.3 bits (65), Expect = 0.98
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +1

Query: 85  KKTIESINSRLALVMKSGKILL 150
           KK  E IN++L LVMKSGK  L
Sbjct: 126 KKNAEGINNKLQLVMKSGKYTL 147


>01_01_1199 -
           9657169-9657254,9657369-9657395,9657485-9657553,
           9657922-9658023,9659895-9660000,9660145-9660165
          Length = 136

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 22/31 (70%), Positives = 24/31 (77%)
 Frame = +2

Query: 140 KYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 232
           KY LGYK  L+TLR  KAKLVII+ N PPLR
Sbjct: 26  KYTLGYKTVLRTLRNSKAKLVIISNNCPPLR 56



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 19/29 (65%), Positives = 24/29 (82%)
 Frame = +1

Query: 64  MVAAKKQKKTIESINSRLALVMKSGKILL 150
           MVAAKK KK+ ++IN++L LVMKSGK  L
Sbjct: 1   MVAAKKTKKSTDNINNKLQLVMKSGKYTL 29


>12_01_0231 + 1744323-1745276,1745516-1746193
          Length = 543

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 1   LSRFFSICALGEDLISIYAPKMVAAKKQKKT 93
           LS  F      EDLI+ Y P+++A K  K T
Sbjct: 350 LSLGFRFNPSAEDLITFYLPRLIAGKPMKDT 380


>11_02_0014 - 7352619-7352918,7353173-7353418
          Length = 181

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +1

Query: 166 FENSSTRQSKAGYHR*KCSSAKVRLLRSRVSQYL 267
           F   ST   K  +HR   SS  VR +RSR  QY+
Sbjct: 133 FPRESTTTGK--FHRLDGSSVNVRFMRSREDQYI 164


>06_01_1127 +
           9294079-9294193,9294300-9294369,9294611-9294716,
           9295665-9295805,9296377-9296475
          Length = 176

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 152 GYKQTLKTLRQGKAKLVIIAKNAPPL 229
           G K+ +K++R+G+  L IIA N  P+
Sbjct: 48  GVKEVVKSIRRGQKGLCIIAGNISPI 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,160,579
Number of Sequences: 37544
Number of extensions: 237620
Number of successful extensions: 418
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)