Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303A02f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40337| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=7.3e-31)        50   9e-07
SB_45395| Best HMM Match : PBAN (HMM E-Value=0.67)                     29   2.3  

>SB_40337| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=7.3e-31)
          Length = 108

 Score = 50.4 bits (115), Expect = 9e-07
 Identities = 24/31 (77%), Positives = 25/31 (80%)
 Frame = +2

Query: 140 KYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 232
           K+ LG K TLKTLRQGKAKLVIIA N P LR
Sbjct: 16  KFTLGLKSTLKTLRQGKAKLVIIANNTPQLR 46



 Score = 37.1 bits (82), Expect = 0.009
 Identities = 20/35 (57%), Positives = 26/35 (74%)
 Frame = +1

Query: 94  IESINSRLALVMKSGKILLRIQANFENSSTRQSKA 198
           +ESINSRLALVMKSGK  L +++  +  + RQ KA
Sbjct: 1   MESINSRLALVMKSGKFTLGLKSTLK--TLRQGKA 33


>SB_45395| Best HMM Match : PBAN (HMM E-Value=0.67)
          Length = 187

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = +1

Query: 19  ICALGEDLISIYAPKMVAAKKQKKTIESINSRLALVMKSGKILLRIQANFENSSTRQSKA 198
           I  LGE       P+   +  ++  I  +  R    +K    + R+  N ENS   Q+K+
Sbjct: 36  IAQLGERQTEDLKPEQTKSGHERAEIAQLGERQTEDLKVPGSIRRVCRNSENSRPEQTKS 95

Query: 199 GYHR 210
           G+ R
Sbjct: 96  GHER 99


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,306,549
Number of Sequences: 59808
Number of extensions: 277477
Number of successful extensions: 643
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)