Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303A02f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032631-5|CAA21573.1| 113|Caenorhabditis elegans Hypothetical ... 54 8e-08
AC006816-1|AAN39661.1| 401|Caenorhabditis elegans Hypothetical ... 30 1.2
AB071420-1|BAB86940.1| 401|Caenorhabditis elegans 2-amino-3-car... 30 1.2
AC024201-4|AAK93867.2| 534|Caenorhabditis elegans Hypothetical ... 29 2.7
Z82277-3|CAB05249.2| 495|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z80214-5|CAJ76929.1| 916|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z80214-4|CAB02263.1| 982|Caenorhabditis elegans Hypothetical pr... 27 6.2
U56963-6|AAB38123.3| 324|Caenorhabditis elegans Serpentine rece... 27 8.1
AC006708-24|AAF60413.1| 660|Caenorhabditis elegans Hypothetical... 27 8.1
>AL032631-5|CAA21573.1| 113|Caenorhabditis elegans Hypothetical
protein Y106G6H.3 protein.
Length = 113
Score = 53.6 bits (123), Expect = 8e-08
Identities = 28/53 (52%), Positives = 36/53 (67%)
Frame = +2
Query: 74 QRNRKRPSSQLTPALLW**NRAKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 232
Q+N + +S+L+ + +Y LGYKQTLK+L GKAKLVIIA N PPLR
Sbjct: 8 QKNAENINSRLSMVM----KTGQYVLGYKQTLKSLLNGKAKLVIIANNTPPLR 56
Score = 33.9 bits (74), Expect = 0.071
Identities = 15/29 (51%), Positives = 22/29 (75%)
Frame = +1
Query: 64 MVAAKKQKKTIESINSRLALVMKSGKILL 150
M A K +K E+INSRL++VMK+G+ +L
Sbjct: 1 MAPAAKPQKNAENINSRLSMVMKTGQYVL 29
>AC006816-1|AAN39661.1| 401|Caenorhabditis elegans Hypothetical
protein Y71D11A.3b protein.
Length = 401
Score = 29.9 bits (64), Expect = 1.2
Identities = 21/43 (48%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
Frame = -1
Query: 365 LSSI*PYFCELFY*---TTK--GIHTSLSVRLHMHPFDKY-WE 255
LS+I P FCE F TTK GI LSV L +HP+D + W+
Sbjct: 200 LSTIMPGFCEFFENWGLTTKTPGICEELSVVLFVHPWDMHMWD 242
>AB071420-1|BAB86940.1| 401|Caenorhabditis elegans
2-amino-3-carboxylmuconate-6-semialdehydedecarboxylase
protein.
Length = 401
Score = 29.9 bits (64), Expect = 1.2
Identities = 21/43 (48%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
Frame = -1
Query: 365 LSSI*PYFCELFY*---TTK--GIHTSLSVRLHMHPFDKY-WE 255
LS+I P FCE F TTK GI LSV L +HP+D + W+
Sbjct: 200 LSTIMPGFCEFFENWGLTTKTPGICEELSVVLFVHPWDMHMWD 242
>AC024201-4|AAK93867.2| 534|Caenorhabditis elegans Hypothetical
protein Y71F9B.6 protein.
Length = 534
Score = 28.7 bits (61), Expect = 2.7
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +1
Query: 25 ALGEDLISIYAPKMVAAKKQKKTIESINSRLALVMKSGKILLRIQANFENSSTRQSKAG 201
+LGE L S P+ A QKKT SI R+A +M S ++ + A S + G
Sbjct: 73 SLGERLSSSNLPQEYAETPQKKT--SIFRRIAKIMSSDDVIYSMTATNSRSPILEEGVG 129
>Z82277-3|CAB05249.2| 495|Caenorhabditis elegans Hypothetical
protein LLC1.3 protein.
Length = 495
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 34 EDLISIYAPKMVAAKKQKKTIESINSRLALVMKSGKI 144
E +I P V AKK ++E+IN+R L+ ++
Sbjct: 137 EGFATIVGPNTVQAKKNDGSVETINARNILIASGSEV 173
>Z80214-5|CAJ76929.1| 916|Caenorhabditis elegans Hypothetical
protein C27D8.3b protein.
Length = 916
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -3
Query: 213 LAMITSFALPCRRVFKVCLYPKQYFARFHHQSKAGVN*LDGLF 85
L + + A P R + KVC KQ++ +FH + ++ L GL+
Sbjct: 107 LVRLVNIARPMR-IPKVCPEAKQWWTQFHELYNSSLHYLHGLY 148
>Z80214-4|CAB02263.1| 982|Caenorhabditis elegans Hypothetical
protein C27D8.3a protein.
Length = 982
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -3
Query: 213 LAMITSFALPCRRVFKVCLYPKQYFARFHHQSKAGVN*LDGLF 85
L + + A P R + KVC KQ++ +FH + ++ L GL+
Sbjct: 173 LVRLVNIARPMR-IPKVCPEAKQWWTQFHELYNSSLHYLHGLY 214
>U56963-6|AAB38123.3| 324|Caenorhabditis elegans Serpentine
receptor, class v protein31 protein.
Length = 324
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -1
Query: 386 TTYTILSLSSI*PYFCELFY*TTKGIHTSLSVRLHMHPFDKYW 258
T YTIL SI +FY TT G+ T +R ++ + ++
Sbjct: 43 TFYTILMQHSIADICIMIFYTTTWGLRTKPGIREMLYTYQHFY 85
>AC006708-24|AAF60413.1| 660|Caenorhabditis elegans Hypothetical
protein Y110A7A.19 protein.
Length = 660
Score = 27.1 bits (57), Expect = 8.1
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +1
Query: 28 LGEDLISIYAPKMVAAKKQKKTIESI--NSRLALVMKSGKILLRI 156
L E+L+SIY K K TIES+ N +L L ++ L RI
Sbjct: 395 LAENLVSIYESKANEVKMPAFTIESMFYNRQLQLAVEQSASLNRI 439
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,701,758
Number of Sequences: 27780
Number of extensions: 223247
Number of successful extensions: 439
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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