Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303A02f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18740.1 68416.m02379 60S ribosomal protein L30 (RPL30C) simi...    46   1e-05
At1g36240.1 68414.m04505 60S ribosomal protein L30 (RPL30A) simi...    46   1e-05
At1g77940.1 68414.m09083 60S ribosomal protein L30 (RPL30B) simi...    45   3e-05
At5g23210.2 68418.m02715 serine carboxypeptidase S10 family prot...    28   4.4  
At5g23210.1 68418.m02714 serine carboxypeptidase S10 family prot...    28   4.4  
At4g23280.1 68417.m03355 protein kinase, putative similar to rec...    27   5.8  
At2g18960.1 68415.m02213 ATPase 1, plasma membrane-type, putativ...    27   7.7  

>At3g18740.1 68416.m02379 60S ribosomal protein L30 (RPL30C) similar
           to 60S RIBOSOMAL PROTEIN L30 GB:O49884 from [Lupinus
           luteus]
          Length = 112

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 19/31 (61%), Positives = 23/31 (74%)
 Frame = +2

Query: 140 KYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 232
           KY LGYK  LK+LR  K KL++I+ N PPLR
Sbjct: 26  KYTLGYKSVLKSLRSSKGKLILISSNCPPLR 56



 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 26/44 (59%), Positives = 30/44 (68%)
 Frame = +1

Query: 64  MVAAKKQKKTIESINSRLALVMKSGKILLRIQANFENSSTRQSK 195
           MVA KK KK+ E INSRLALVMKSGK  L  ++  +  S R SK
Sbjct: 1   MVAEKKAKKSHEGINSRLALVMKSGKYTLGYKSVLK--SLRSSK 42


>At1g36240.1 68414.m04505 60S ribosomal protein L30 (RPL30A) similar
           to GI:6984132 from [Euphorbia esula]
          Length = 112

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 19/31 (61%), Positives = 23/31 (74%)
 Frame = +2

Query: 140 KYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 232
           KY LGYK  LK+LR  K KL++I+ N PPLR
Sbjct: 26  KYTLGYKSVLKSLRSSKGKLILISSNCPPLR 56



 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 27/44 (61%), Positives = 31/44 (70%)
 Frame = +1

Query: 64  MVAAKKQKKTIESINSRLALVMKSGKILLRIQANFENSSTRQSK 195
           MVAAKK KK+ E INSRLALVMKSGK  L  ++  +  S R SK
Sbjct: 1   MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLK--SLRSSK 42


>At1g77940.1 68414.m09083 60S ribosomal protein L30 (RPL30B) similar
           to ribosomal protein L30 GI:388034 from [Homo sapiens]
          Length = 112

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 19/31 (61%), Positives = 23/31 (74%)
 Frame = +2

Query: 140 KYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 232
           KY LGYK  LK+LR  K KL++I+ N PPLR
Sbjct: 26  KYTLGYKSVLKSLRGSKGKLILISTNCPPLR 56



 Score = 41.1 bits (92), Expect = 4e-04
 Identities = 21/29 (72%), Positives = 22/29 (75%)
 Frame = +1

Query: 64  MVAAKKQKKTIESINSRLALVMKSGKILL 150
           MV  KK KK+ E INSRLALVMKSGK  L
Sbjct: 1   MVTEKKTKKSHEGINSRLALVMKSGKYTL 29


>At5g23210.2 68418.m02715 serine carboxypeptidase S10 family protein
           similar to Serine carboxypeptidase II chains A and B
           (SP:P08819) (EC 3.4.16.6) [Triticum aestivum (Wheat)];
          Length = 403

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 19/68 (27%), Positives = 30/68 (44%)
 Frame = +1

Query: 1   LSRFFSICALGEDLISIYAPKMVAAKKQKKTIESINSRLALVMKSGKILLRIQANFENSS 180
           L  +F +  +  D+ S+YAPK V       T  S+     L   + + +LR +    N  
Sbjct: 188 LDEYFDVYKI-LDMYSLYAPKCVPTSTNSSTSHSVAGNRPL--PAFRSILRPRLISHNEG 244

Query: 181 TRQSKAGY 204
            R+  AGY
Sbjct: 245 WRRMAAGY 252


>At5g23210.1 68418.m02714 serine carboxypeptidase S10 family protein
           similar to Serine carboxypeptidase II chains A and B
           (SP:P08819) (EC 3.4.16.6) [Triticum aestivum (Wheat)];
          Length = 363

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 19/68 (27%), Positives = 30/68 (44%)
 Frame = +1

Query: 1   LSRFFSICALGEDLISIYAPKMVAAKKQKKTIESINSRLALVMKSGKILLRIQANFENSS 180
           L  +F +  +  D+ S+YAPK V       T  S+     L   + + +LR +    N  
Sbjct: 188 LDEYFDVYKI-LDMYSLYAPKCVPTSTNSSTSHSVAGNRPL--PAFRSILRPRLISHNEG 244

Query: 181 TRQSKAGY 204
            R+  AGY
Sbjct: 245 WRRMAAGY 252


>At4g23280.1 68417.m03355 protein kinase, putative similar to
           receptor-like protein kinase 4 (gi:13506745), 5
           (gi:13506747), and 6 (gi:13506749) from Arabidopsis
           thaliana; contains Pfam protein kinase domain PF00069
          Length = 656

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -2

Query: 277 IPLTSIGKLYFSVASP*RRSIFSDDNQLCFALSKSFQSLLVS*AIFCPISSPKQGG 110
           IPL  + +    V  P   +   DD     +L   F++++ +  IF PI+   QGG
Sbjct: 289 IPLFKVKRKETEVTEPPAETTDGDDITTAGSLQFDFKAIVAATDIFLPINKLGQGG 344


>At2g18960.1 68415.m02213 ATPase 1, plasma membrane-type, putative /
           proton pump 1, putative / proton-exporting ATPase,
           putative strong similarity to SP|P20649 ATPase 1, plasma
           membrane-type (EC 3.6.3.6) (Proton pump 1) {Arabidopsis
           thaliana}; contains InterPro accession IPR001757:
           ATPase, E1-E2 type; contains Pfam profile PF00690:
           Cation transporter/ATPase, N-terminus
          Length = 949

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = +1

Query: 31  GEDLISIYAPKMVAAKKQKKTIESIN---SRLALVMKSGKILLRIQANFEN 174
           GED I I+ P  +  KK+ K ++ +    + L+ VM++  ++    AN +N
Sbjct: 38  GEDRIVIFGPNKLEEKKESKILKFLGFMWNPLSWVMEAAALMAIALANGDN 88


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,005,562
Number of Sequences: 28952
Number of extensions: 206031
Number of successful extensions: 374
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)