Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302H11f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0026 - 25024807-25025300,25025432-25025495,25025567-250256...    30   1.3  
07_01_0998 - 8414492-8415175                                           27   6.9  
06_01_0569 + 4019254-4021996,4022121-4022272,4022356-4022427,402...    27   6.9  
04_03_0833 + 20147242-20147849,20147937-20148081,20148157-201482...    27   6.9  
04_03_0758 + 19322891-19323193,19323606-19323778,19324778-19326095     27   6.9  
11_01_0319 - 2396835-2396951,2397035-2397105,2397219-2397297,239...    27   9.1  
01_01_0321 - 2584332-2584661,2584776-2584883,2584987-2585070,258...    27   9.1  

>05_06_0026 -
           25024807-25025300,25025432-25025495,25025567-25025662,
           25025719-25025929,25026616-25026690,25026820-25027037
          Length = 385

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 206 RACCC*GDRSRCSLRCTCGCLQDHQSCSIFC 298
           R C C   +S C L+  C C QD   CS+FC
Sbjct: 182 RGCNC--KKSSC-LKKYCDCYQDGTGCSLFC 209


>07_01_0998 - 8414492-8415175
          Length = 227

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = +2

Query: 212 CCC*GDRSRCSLRCTCGCLQ-DHQSCSIFCVILLL 313
           C C      C  RC CGC+  D +    +C + LL
Sbjct: 8   CGCYECYDACCDRCCCGCVSYDTRETIFYCAVCLL 42


>06_01_0569 +
           4019254-4021996,4022121-4022272,4022356-4022427,
           4022521-4022673,4022749-4022912,4022990-4023137,
           4023530-4023652,4023774-4023861,4023951-4024129
          Length = 1273

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +3

Query: 129 ATYS-AHGAPAIAAYSAHATPAVATYS 206
           A+Y+ +H  P +A+Y+ H  P VA+Y+
Sbjct: 283 ASYAPSHQPPQVASYAPHQQPQVASYA 309


>04_03_0833 +
           20147242-20147849,20147937-20148081,20148157-20148210,
           20148297-20148388,20148957-20149093,20149210-20149464,
           20149598-20149771,20149863-20149960
          Length = 520

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 281 SCSIFCVILLLYHSPWWFLRRT 346
           SC +FC+++   H P+ +L  T
Sbjct: 314 SCMMFCILIFTMHIPYMYLMNT 335


>04_03_0758 + 19322891-19323193,19323606-19323778,19324778-19326095
          Length = 597

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -3

Query: 270 WRQPQVQRKLQRERSP*QQQ 211
           WRQ  V+++ Q++R+P QQQ
Sbjct: 322 WRQQMVEQQQQQQRAPMQQQ 341


>11_01_0319 -
           2396835-2396951,2397035-2397105,2397219-2397297,
           2397417-2397458,2397670-2397723,2397836-2397868,
           2397959-2398039,2398144-2398230,2398313-2398388,
           2398633-2398808,2398912-2399034,2399249-2399361,
           2399521-2399632,2400054-2400273,2401986-2402314,
           2402408-2402713,2403580-2403878,2404079-2404181,
           2404266-2404369,2404840-2404906,2404911-2405076,
           2405241-2405956
          Length = 1157

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 29  RLCRISGCDQDHFSSCFLSIFLLVH 103
           R C I+   QD+F  CF+  + ++H
Sbjct: 512 RFCMINKVYQDNFEKCFVQQYSMIH 536


>01_01_0321 -
           2584332-2584661,2584776-2584883,2584987-2585070,
           2585162-2585221,2585322-2585421,2585504-2585906,
           2586183-2586480,2587526-2587711
          Length = 522

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 132 LRKMVIHERLWTSKKILRKQLEKWSWSQPEMRHKR 28
           LR  +  ER WT + I ++Q + W    P+ RH+R
Sbjct: 87  LRLRLHRERKWTDQCIFQQQQQNW----PQNRHQR 117


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,131,627
Number of Sequences: 37544
Number of extensions: 217965
Number of successful extensions: 642
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)