Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302H11f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28212| Best HMM Match : C1_3 (HMM E-Value=0.59)                     32   0.33 
SB_5147| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.58 
SB_10193| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_7408| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.0  
SB_55427| Best HMM Match : E-MAP-115 (HMM E-Value=0.077)               30   1.3  
SB_19190| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               29   3.1  
SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74)           28   5.4  
SB_24840| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_23195| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-10)              28   5.4  
SB_23686| Best HMM Match : NHL (HMM E-Value=2.7e-07)                   28   5.4  
SB_54444| Best HMM Match : zf-CCHC (HMM E-Value=0.035)                 27   7.1  
SB_37781| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)                  27   9.4  
SB_25340| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_16838| Best HMM Match : TolA (HMM E-Value=2)                        27   9.4  

>SB_28212| Best HMM Match : C1_3 (HMM E-Value=0.59)
          Length = 218

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
 Frame = +2

Query: 191 SCDVLR--ACCC*GDRSRCSLRCTCGCLQDHQSCSIF-CVILLLYHSPWWFLRRTLRCPR 361
           +C V+R  ACC     + C +RC   C+    +C +  CV   +         R +RC  
Sbjct: 37  ACCVMRCVACCVMRCVACCVMRCVACCVMHCVACCVMRCVACRVMRC---VACRVMRCVA 93

Query: 362 CIYLCRCTDSD*VLCRPCCGYLRRC 436
           C  +C C     + C  CC  + RC
Sbjct: 94  CRVMC-CVACFVMHCVACC--VMRC 115


>SB_5147| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 347

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 165 RRWLEHREQSMLRKMVIHERLWTSKKILRKQLEK 64
           R W+  +E   + + +    LW S+KIL+ QLEK
Sbjct: 169 RSWISEQELEDIDEEIRRLELWLSRKILKHQLEK 202


>SB_10193| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 831

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +2

Query: 161 RRILRPRYTRSCDVLRACCC*GDRSRCSLRCTCGCLQDHQSCSIFC 298
           R I  P  +++C  L  C C G  +RC       C++ H  C++ C
Sbjct: 785 RWITIPEVSKACSELTKCSCKGVCTRCK------CIKAHLECTLLC 824


>SB_7408| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 23/81 (28%), Positives = 41/81 (50%)
 Frame = -3

Query: 381 QRHR*IQRGQRKVLRKNHHGLW*RSKMTQKILQD*WSWRQPQVQRKLQRERSP*QQQARS 202
           QR R  QR +++  ++  H    R +  Q+  Q     RQ Q QR+ QR+R   +Q+ R 
Sbjct: 30  QRQRQRQRQRQRQRQRQRHRQRQRQRQRQRQRQ-----RQRQRQRQRQRQRQRQRQRQRQ 84

Query: 201 TSQLRV*RGRSMRRWLEHREQ 139
             + R+ + + +R+    R+Q
Sbjct: 85  RQRQRLRQRQRLRQRQRQRQQ 105



 Score = 29.5 bits (63), Expect = 1.8
 Identities = 20/89 (22%), Positives = 45/89 (50%)
 Frame = -3

Query: 267 RQPQVQRKLQRERSP*QQQARSTSQLRV*RGRSMRRWLEHREQSMLRKMVIHERLWTSKK 88
           RQ Q QR+ QR+R   +Q+ R   + R  + +  R+   HR++   R+    +R    ++
Sbjct: 9   RQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRHRQRQRQRQRQ-RQRQRQRQR 67

Query: 87  ILRKQLEKWSWSQPEMRHKRTMVQRRTNM 1
             ++Q ++    Q + + +R  +++R  +
Sbjct: 68  QRQRQRQRQRQRQRQRQRQRQRLRQRQRL 96


>SB_55427| Best HMM Match : E-MAP-115 (HMM E-Value=0.077)
          Length = 599

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 17/60 (28%), Positives = 33/60 (55%)
 Frame = -3

Query: 240 QRERSP*QQQARSTSQLRV*RGRSMRRWLEHREQSMLRKMVIHERLWTSKKILRKQLEKW 61
           +R+R+  + + R  ++L   R + M      REQ +LRK +I +RL    +  R++ ++W
Sbjct: 134 RRQRAKMEAEQRRQAELEKQRQQQMEM---EREQEVLRKQMIQQRLQAQIEAERQRQKEW 190


>SB_19190| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 1829

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 11  RRCTIVRLCRISGCDQDHFS 70
           RRC   R C +SGC + H S
Sbjct: 793 RRCKTYRACLVSGCSEKHHS 812


>SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74)
          Length = 328

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 18/66 (27%), Positives = 26/66 (39%)
 Frame = +2

Query: 140 CSRCSSHRRILRPRYTRSCDVLRACCC*GDRSRCSLRCTCGCLQDHQSCSIFCVILLLYH 319
           C   S  R   +P   R+   +  CCC     RCS+   C C      C+  C++     
Sbjct: 201 CLDSSPRRSSSKPGPRRADCYVNLCCC--VTCRCSVCTCCPCDCTCLQCAP-CIVFSALC 257

Query: 320 SPWWFL 337
            P+W L
Sbjct: 258 CPFWSL 263


>SB_24840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 18/66 (27%), Positives = 26/66 (39%)
 Frame = +2

Query: 140 CSRCSSHRRILRPRYTRSCDVLRACCC*GDRSRCSLRCTCGCLQDHQSCSIFCVILLLYH 319
           C   S  R   +P   R+   +  CCC     RCS+   C C      C+  C++     
Sbjct: 201 CLDSSPRRSSSKPGPRRADCYVNLCCC--VTCRCSVCTCCPCDCPCLQCAP-CIVFSALC 257

Query: 320 SPWWFL 337
            P+W L
Sbjct: 258 CPFWSL 263


>SB_23195| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-10)
          Length = 466

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
 Frame = +2

Query: 143 SRCSSHRRILRPRYTRSCDVLRACCC*GDRSRCSLRCTCGCL--QDHQSCSIFCVILLLY 316
           S  S   RI R   T  CDV+  C C G   R  +RC    L   +   C I      L 
Sbjct: 101 SSSSDSCRICRDS-TAGCDVISPCHCSGTLGRVHVRCLEEWLSASNKNECEICKYEYHLQ 159

Query: 317 HSPWWFLRRTLRCPR 361
            +P  F R+ L+ PR
Sbjct: 160 RTPKTF-RQWLKNPR 173


>SB_23686| Best HMM Match : NHL (HMM E-Value=2.7e-07)
          Length = 1055

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +2

Query: 245 LRCTCGCLQDHQSCSIFCVILLLYHSPWWFLRRTLRCPRCI 367
           L C C C    ++ S+    LLL HS W  LRR   C  C+
Sbjct: 421 LDCICHCDICFENKSVCAQCLLLGHSEWHPLRRP--CLECL 459


>SB_54444| Best HMM Match : zf-CCHC (HMM E-Value=0.035)
          Length = 671

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 11  RRCTIVRLCRISGCDQDHFS 70
           RRC   + C +SGC + H S
Sbjct: 162 RRCKTYKACLVSGCSEKHHS 181


>SB_37781| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 631

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 287 CRTDGLGDNRRCSVSYSG 234
           CR  GLG   RCS +Y+G
Sbjct: 281 CRVAGLGSGNRCSGAYTG 298


>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
          Length = 765

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = -3

Query: 273 SWRQPQVQRKLQRERSP*QQQARSTSQLRV*RGRSMRRWLEHREQSMLRKMVIHERLWTS 94
           S R  +  R   R RSP  +++RS  + R  + RS RR   +R+ S  R+     R  + 
Sbjct: 271 SSRSHRKHRSHSRSRSPRSKRSRSPRKRRRSKSRSPRR---YRDSSSCRRRRSRSRSRSP 327

Query: 93  KKILRKQ 73
           K  LR +
Sbjct: 328 KSRLRSR 334


>SB_25340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1105

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 18/56 (32%), Positives = 21/56 (37%)
 Frame = +2

Query: 131 NILCSRCSSHRRILRPRYTRSCDVLRACCC*GDRSRCSLRCTCGCLQDHQSCSIFC 298
           + LC R       L  R  + C    AC C     RC   C C C Q   SC+  C
Sbjct: 29  SFLCMRLLEKVSFLCMRLLKRCHSC-ACAC---WKRCH-SCACACWQRCHSCACAC 79


>SB_16838| Best HMM Match : TolA (HMM E-Value=2)
          Length = 371

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 18/70 (25%), Positives = 37/70 (52%)
 Frame = -3

Query: 402 KT*SLSVQRHR*IQRGQRKVLRKNHHGLW*RSKMTQKILQD*WSWRQPQVQRKLQRERSP 223
           +T +  +Q+ +  Q+ Q+K  ++         K+ Q+  +     RQPQ +R+ Q++R P
Sbjct: 48  RTYNYDIQQQQKRQQQQQKRQQQKQKRQQQEQKLQQQQRRQQQQKRQPQQRRQQQQQRQP 107

Query: 222 *QQQARSTSQ 193
            QQ+++   Q
Sbjct: 108 -QQKSQQQQQ 116


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,358,283
Number of Sequences: 59808
Number of extensions: 257840
Number of successful extensions: 836
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)