Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302H11f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z75952-5|CAB00093.2|  149|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z75552-8|CAD54158.1|  939|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z75552-7|CAA99943.3|  944|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z75539-5|CAD54134.1|  939|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z75539-4|CAA99846.3|  944|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z49912-7|CAI70412.1|  554|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z49912-6|CAA90137.1|  615|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AL132860-29|CAB60505.2|  386|Caenorhabditis elegans Hypothetical...    27   6.2  
AC199171-1|ABO33269.1|  121|Caenorhabditis elegans Hypothetical ...    27   6.2  
AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical ...    27   6.2  

>Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical
           protein R13H4.8 protein.
          Length = 212

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/42 (38%), Positives = 17/42 (40%)
 Frame = +2

Query: 140 CSRCSSHRRILRPRYTRSCDVLRACCC*GDRSRCSLRCTCGC 265
           C RC +  R      TR C   R CCC      C   C CGC
Sbjct: 97  CRRCCTCCRTCC--CTRCCTCCRPCCC-----GCGCGCGCGC 131


>Z75952-5|CAB00093.2|  149|Caenorhabditis elegans Hypothetical
           protein F29D10.2 protein.
          Length = 149

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +2

Query: 185 TRSCDVLRACCC*GDRSRCSLRCTCGC 265
           TR C   R CCC      C   C CGC
Sbjct: 92  TRCCTCCRPCCC-----GCGCGCGCGC 113


>Z75552-8|CAD54158.1|  939|Caenorhabditis elegans Hypothetical
           protein F28C1.3b protein.
          Length = 939

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
 Frame = +2

Query: 35  CRIS-GCDQDHFSSCF---LSIFLLVHNRSWITIFRNILCSRCSSHRRILRPRYTRSCDV 202
           C IS G   + + SC    LS    +  R W TIFR+I   R +   ++L  RYT   D 
Sbjct: 190 CAISLGEMIEFYDSCVRLNLSFNKQIDMRGWTTIFRSI---RHAVSLQMLNLRYTNLNDR 246

Query: 203 LRACCC*GDRSRCSLRCTCGCLQDHQSCSIFCVILL 310
                C   R++ S   TC  L++ Q      ++L+
Sbjct: 247 SIPALCKMARAQPSASLTCLHLENTQMSGKNLLVLI 282


>Z75552-7|CAA99943.3|  944|Caenorhabditis elegans Hypothetical
           protein F28C1.3a protein.
          Length = 944

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
 Frame = +2

Query: 35  CRIS-GCDQDHFSSCF---LSIFLLVHNRSWITIFRNILCSRCSSHRRILRPRYTRSCDV 202
           C IS G   + + SC    LS    +  R W TIFR+I   R +   ++L  RYT   D 
Sbjct: 190 CAISLGEMIEFYDSCVRLNLSFNKQIDMRGWTTIFRSI---RHAVSLQMLNLRYTNLNDR 246

Query: 203 LRACCC*GDRSRCSLRCTCGCLQDHQSCSIFCVILL 310
                C   R++ S   TC  L++ Q      ++L+
Sbjct: 247 SIPALCKMARAQPSASLTCLHLENTQMSGKNLLVLI 282


>Z75539-5|CAD54134.1|  939|Caenorhabditis elegans Hypothetical
           protein F28C1.3b protein.
          Length = 939

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
 Frame = +2

Query: 35  CRIS-GCDQDHFSSCF---LSIFLLVHNRSWITIFRNILCSRCSSHRRILRPRYTRSCDV 202
           C IS G   + + SC    LS    +  R W TIFR+I   R +   ++L  RYT   D 
Sbjct: 190 CAISLGEMIEFYDSCVRLNLSFNKQIDMRGWTTIFRSI---RHAVSLQMLNLRYTNLNDR 246

Query: 203 LRACCC*GDRSRCSLRCTCGCLQDHQSCSIFCVILL 310
                C   R++ S   TC  L++ Q      ++L+
Sbjct: 247 SIPALCKMARAQPSASLTCLHLENTQMSGKNLLVLI 282


>Z75539-4|CAA99846.3|  944|Caenorhabditis elegans Hypothetical
           protein F28C1.3a protein.
          Length = 944

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
 Frame = +2

Query: 35  CRIS-GCDQDHFSSCF---LSIFLLVHNRSWITIFRNILCSRCSSHRRILRPRYTRSCDV 202
           C IS G   + + SC    LS    +  R W TIFR+I   R +   ++L  RYT   D 
Sbjct: 190 CAISLGEMIEFYDSCVRLNLSFNKQIDMRGWTTIFRSI---RHAVSLQMLNLRYTNLNDR 246

Query: 203 LRACCC*GDRSRCSLRCTCGCLQDHQSCSIFCVILL 310
                C   R++ S   TC  L++ Q      ++L+
Sbjct: 247 SIPALCKMARAQPSASLTCLHLENTQMSGKNLLVLI 282


>Z49912-7|CAI70412.1|  554|Caenorhabditis elegans Hypothetical
           protein T24F1.3b protein.
          Length = 554

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
 Frame = +2

Query: 326 WWFLRRTLRCPRCIYLC--RCTDSD*VLCR 409
           W  L+  L+C  C Y C  RC D   + CR
Sbjct: 125 WGILKEALKCEHCNYTCHARCRDLVTLDCR 154


>Z49912-6|CAA90137.1|  615|Caenorhabditis elegans Hypothetical
           protein T24F1.3a protein.
          Length = 615

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
 Frame = +2

Query: 326 WWFLRRTLRCPRCIYLC--RCTDSD*VLCR 409
           W  L+  L+C  C Y C  RC D   + CR
Sbjct: 186 WGILKEALKCEHCNYTCHARCRDLVTLDCR 215


>AL132860-29|CAB60505.2|  386|Caenorhabditis elegans Hypothetical
           protein Y56A3A.28 protein.
          Length = 386

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 107 RSWITIFRNILCSRCSSHRRILRPRYTRSCDVL 205
           RSW +I R+ LC  C  + R  R  Y  + D L
Sbjct: 10  RSWTSISRHFLCLECRKYFRNKREFYWHTEDCL 42


>AC199171-1|ABO33269.1|  121|Caenorhabditis elegans Hypothetical
           protein VY35H6BL.2 protein.
          Length = 121

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 245 LRCTCGCLQDHQSCSIFCVILLLYHSPWWFLRRTLRC 355
           L C+  C +  +   +   + LL  SP W +R+TLRC
Sbjct: 14  LPCSNLCSKAFELTDLCPEVELLKLSPSWLIRKTLRC 50


>AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical
           protein Y108G3AL.7 protein.
          Length = 1192

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 207 RSTSQLRV*RGRS-MRRWLEHREQSMLRKMVIHERLWTSKKILR 79
           R+   LR  R R  +  WLE  E+  +R +VIHE    +++IL+
Sbjct: 459 RTEKLLRSQRRRDWVGSWLEGLEREKIRFVVIHESYTQARRILK 502


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,528,856
Number of Sequences: 27780
Number of extensions: 168142
Number of successful extensions: 660
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)