Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302H11f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.62 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   4.4  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   7.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = +2

Query: 179 RYTRSCDVLRACCC*GDRSRCSLRCTCGC 265
           RY   C  L   CC  D   C + C  GC
Sbjct: 738 RYEAHCFAL-CHCCDFDACDCEMTCPAGC 765



 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/19 (42%), Positives = 8/19 (42%)
 Frame = +2

Query: 362 CIYLCRCTDSD*VLCRPCC 418
           C  LC C D D   C   C
Sbjct: 743 CFALCHCCDFDACDCEMTC 761


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -3

Query: 264  QPQVQRKLQRERSP*QQQ 211
            QPQ Q++ Q+++ P QQQ
Sbjct: 1530 QPQQQQQQQQQQQPQQQQ 1547



 Score = 22.6 bits (46), Expect = 2.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 264 QPQVQRKLQRERSP*QQQARSTSQLRV*RG 175
           QPQ Q++ Q+++ P QQQ +   Q +  RG
Sbjct: 829 QPQQQQQ-QQQQQPQQQQQQQQQQQQQQRG 857


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 267 RQPQVQRKLQRERSP*QQQARSTSQ 193
           +QPQ Q++ Q+++   QQQ +   Q
Sbjct: 438 QQPQQQQQQQQQQQQQQQQQQQQQQ 462


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +2

Query: 272 DHQSCSIFCVILLLYHSPWW 331
           D  +C +   ILL+ + P+W
Sbjct: 94  DIWACGVILYILLVGYPPFW 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,431
Number of Sequences: 438
Number of extensions: 2049
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)