Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302H11f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18320.1 68418.m02156 armadillo/beta-catenin repeat family pr...    28   3.3  
At3g05780.1 68416.m00649 Lon protease, putative similar to Lon p...    27   5.8  
At5g46070.1 68418.m05665 guanylate-binding family protein contai...    27   7.7  

>At5g18320.1 68418.m02156 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 458

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = -3

Query: 174 RSMRRWLEHREQSMLRKMVIHERLWTSKKILRKQLEKW 61
           R +  WL+H       K V+  RLW    ++   + +W
Sbjct: 100 RYITEWLKHERTCPKTKQVLSHRLWIPNHLISDLITQW 137


>At3g05780.1 68416.m00649 Lon protease, putative similar to Lon
           protease homolog 2 SP:P93655
          Length = 924

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 9/29 (31%), Positives = 22/29 (75%)
 Frame = -3

Query: 153 EHREQSMLRKMVIHERLWTSKKILRKQLE 67
           +H+ Q +L ++ +H+RL  + ++++KQ+E
Sbjct: 298 KHKNQGVLTELDVHKRLELTLELVKKQVE 326


>At5g46070.1 68418.m05665 guanylate-binding family protein contains
           Pfam domains PF02263: Guanylate-binding protein,
           N-terminal domain and PF02841: Guanylate-binding
           protein, C-terminal domain
          Length = 1060

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/56 (21%), Positives = 30/56 (53%)
 Frame = -3

Query: 246 KLQRERSP*QQQARSTSQLRV*RGRSMRRWLEHREQSMLRKMVIHERLWTSKKILR 79
           KLQ E S   ++  +  +    +   ++ W+ + +Q +L++  + E+L +  ++LR
Sbjct: 545 KLQGENSSLNERCSTLVKTVESKKEEIKEWIRNYDQIVLKQKAVQEQLSSEMEVLR 600


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,216,901
Number of Sequences: 28952
Number of extensions: 153966
Number of successful extensions: 456
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)