Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302H10f
         (504 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    26   3.7  
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    26   3.7  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    25   6.5  
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ...    25   6.5  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    25   6.5  
SPAC167.06c |mug143|SPAC57A7.02c|sequence orphan|Schizosaccharom...    25   8.5  
SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase S...    25   8.5  

>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 18/48 (37%), Positives = 29/48 (60%)
 Frame = -1

Query: 234 VFTFFKSRNSRVSWNGILYFQ**SV*FNYMHIELQFDIPINQNSY*VI 91
           +F F +S +SR + +G+L F+      NY+HIE  FDI   Q+ + +I
Sbjct: 1   MFHFQRSFSSRKA-HGLLSFKN----RNYIHIEAPFDIAAIQDGWNII 43


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 286 LLRRRQSFQSKIQELNTIEEKQI-ALNMPRYYGWQCIMLNNDKVPYN 423
           L R+R +F  K+ ELN  +++++  LN+P   G+       DK  ++
Sbjct: 39  LRRKRSNFFPKLDELNGAQDEEMRGLNIPGGSGYLENRYGRDKFTFS 85


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +3

Query: 309 SKQNTRTKHDRRETNSLKYASLLWMAVYNV 398
           SK    TKH  R   S  YA   W  +YN+
Sbjct: 432 SKSKAWTKHFIRNGESAAYAWSQWKGLYNL 461


>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 878

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 61  LGDIYIN*ETNNSIGILIYG 120
           LGDIY+N +TN ++ +L  G
Sbjct: 572 LGDIYVNHDTNFALKLLSQG 591


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 291 ASKTKFSKQNTRTKHDRRETNSLKYA 368
           A++TKF K  T+T + +R + SLK A
Sbjct: 833 ATRTKFGKLCTKTHYRKRYSISLKNA 858


>SPAC167.06c |mug143|SPAC57A7.02c|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 121

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 452 LV*YCTKGIALYGTLSLFNIIHCHP 378
           ++ Y   GI L+G+L+LFN     P
Sbjct: 1   MIRYSLNGIRLFGSLNLFNATRILP 25


>SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase
           Srb10 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 185 MPFQDTLLLRLLKKVNTPRHRSIP 256
           +PFQ T +LR+++ + TP     P
Sbjct: 232 VPFQSTQMLRIMELLGTPTEERWP 255


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,781,443
Number of Sequences: 5004
Number of extensions: 33506
Number of successful extensions: 84
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)