Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302H10f
         (504 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15680.1 68418.m01834 expressed protein                             30   1.0  
At5g53080.1 68418.m06594 kinesin light chain-related low similar...    27   7.2  

>At5g15680.1 68418.m01834 expressed protein 
          Length = 2151

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +1

Query: 343  EKQIALNMPRYYGWQCIMLNNDKVPYNAMPLVQYYTRS 456
            E ++ +++     W C+ L  D+V  +A+PL Q Y ++
Sbjct: 1885 ETRLLMHITGLLPWLCLQLTQDQVMVSALPLQQQYQKA 1922


>At5g53080.1 68418.m06594 kinesin light chain-related low similarity
           to kinesin light chain from [Plectonema boryanum]
           GI:2645229, [Loligo pealei] GI:403179; contains Pfam
           profile PF00515: TPR Domain
          Length = 564

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 367 PRYYGWQCIMLNNDK 411
           PRY  WQC+ L N K
Sbjct: 29  PRYSTWQCVCLRNQK 43


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,696,212
Number of Sequences: 28952
Number of extensions: 154067
Number of successful extensions: 329
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)