Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302H08f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0240 - 26629218-26629323,26629412-26629490,26629656-266297...    28   5.2  
12_02_0510 + 19846834-19848100,19848114-19848391                       27   6.9  
12_02_0506 - 19794383-19794670,19795066-19795140,19795337-197987...    27   6.9  
08_02_0377 + 16481232-16481361,16482501-16482547,16482634-164827...    27   6.9  

>05_06_0240 -
           26629218-26629323,26629412-26629490,26629656-26629761,
           26629844-26629947,26630069-26630168,26630256-26630351,
           26630464-26630541,26630603-26630671,26630766-26630846,
           26630879-26630935,26631016-26631105,26631192-26631278,
           26631690-26631794,26631899-26631994,26632222-26632397,
           26632847-26633006,26633151-26633600
          Length = 679

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +2

Query: 269 ELDKLLTENEKLKHRLAILENAIK 340
           ELDK++T NE  K  + I++NA+K
Sbjct: 560 ELDKIITANEDEKIGVQIIKNALK 583


>12_02_0510 + 19846834-19848100,19848114-19848391
          Length = 514

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +2

Query: 248 LSYVGNPELDKLLTENEKLKHRL 316
           +SYV N  LD+L  ENE LK +L
Sbjct: 26  ISYVVNKALDRLPLENEDLKTKL 48


>12_02_0506 -
           19794383-19794670,19795066-19795140,19795337-19798704,
           19799503-19799671,19799758-19799850
          Length = 1330

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +2

Query: 248 LSYVGNPELDKLLTENEKLKHRL 316
           +SYV N  LD+L  ENE LK +L
Sbjct: 117 ISYVVNKALDRLPLENEDLKTKL 139


>08_02_0377 +
           16481232-16481361,16482501-16482547,16482634-16482711,
           16482826-16482896,16483005-16483086
          Length = 135

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +2

Query: 245 DLSYVGNPELDKLLTENEKLKHRLAILENAIKVE 346
           DLS    PELDK   + EK K +L  LE    +E
Sbjct: 6   DLSQYIGPELDKKKAKLEKAKSKLLELEKKADIE 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,888,958
Number of Sequences: 37544
Number of extensions: 145017
Number of successful extensions: 300
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)