Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302H08f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31340.1 68417.m04445 myosin heavy chain-related contains wea...    29   1.9  
At2g34990.1 68415.m04293 zinc finger (C3HC4-type RING finger) fa...    27   7.7  

>At4g31340.1 68417.m04445 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, nonmuscle type A
           (Cellular myosin heavy chain, type A) (Nonmuscle myosin
           heavy chain-A) (NMMHC-A) (Swiss-Prot:P35579) [Homo
           sapiens]
          Length = 437

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 263 NPELDKLLTENEKLKHRLAILENAIKV 343
           N  LDKL   NE+ K+++  LE AIK+
Sbjct: 153 NSSLDKLQKTNEEQKNKIGKLERAIKI 179


>At2g34990.1 68415.m04293 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 302

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 18/54 (33%), Positives = 30/54 (55%)
 Frame = -3

Query: 471 TSKRFFSSSNMQKLLSTDLVSVTSIGNVRFLASFLIAAEDSVSTFMAFSRIARR 310
           TS++F+S  ++     +D+ S TSI  VR L   +I   +S  TF+ +S +  R
Sbjct: 38  TSRQFYSQESINPFTDSDVESRTSITAVRGLDEAII---NSFPTFL-YSEVKER 87


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,416,178
Number of Sequences: 28952
Number of extensions: 128640
Number of successful extensions: 301
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)