Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302H07f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26442| Best HMM Match : Iso_dh (HMM E-Value=3.6e-37) 210 4e-55
SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0) 200 7e-52
SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_33334| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_7874| Best HMM Match : PSI (HMM E-Value=8.4) 28 5.4
SB_7343| Best HMM Match : EGF (HMM E-Value=0) 28 5.4
SB_48254| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076) 27 7.1
SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35) 27 9.4
SB_41606| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_39815| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_20069| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_4072| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_26442| Best HMM Match : Iso_dh (HMM E-Value=3.6e-37)
Length = 296
Score = 210 bits (514), Expect = 4e-55
Identities = 98/114 (85%), Positives = 104/114 (91%)
Frame = +2
Query: 179 IELHVYDLGMENRDKTDDQVTIDCAEAIKKYNVGIKCATITPDEKRVEEFKLKKMWKSPN 358
+EL YDL +ENRD T+DQVTID A AIK+ +VGIKCATITPDEKRVEEFKLKKMWKSPN
Sbjct: 1 MELKSYDLSIENRDATNDQVTIDAAAAIKQCHVGIKCATITPDEKRVEEFKLKKMWKSPN 60
Query: 359 GTIRNILGGTVFREAIICKNIPRLVTGWDKPIIIGRHAHADQYKATDFVVPGAG 520
GTIRNILGGTVFREAIICKNIPRLV+ W KPIIIGRHAHADQYKATDFVVPG G
Sbjct: 61 GTIRNILGGTVFREAIICKNIPRLVSPWTKPIIIGRHAHADQYKATDFVVPGPG 114
>SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0)
Length = 644
Score = 200 bits (487), Expect = 7e-52
Identities = 87/122 (71%), Positives = 106/122 (86%)
Frame = +2
Query: 155 KLIIPFLDIELHVYDLGMENRDKTDDQVTIDCAEAIKKYNVGIKCATITPDEKRVEEFKL 334
+LI P+LD+++ +DLG+E+RD T+D+VT++ AEAI+K++VGIKCATITPDE RVEEFKL
Sbjct: 19 QLISPYLDLDIKYFDLGLEHRDATNDKVTVEAAEAIRKHHVGIKCATITPDEARVEEFKL 78
Query: 335 KKMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWDKPIIIGRHAHADQYKATDFVVPG 514
KKMWKSPNGTIRNILGGTVFR IICK +PRLV GW+KPI+IGRHA DQY+A DF V G
Sbjct: 79 KKMWKSPNGTIRNILGGTVFRAPIICKTVPRLVPGWEKPIVIGRHAFGDQYRARDFAVNG 138
Query: 515 AG 520
G
Sbjct: 139 PG 140
>SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1378
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = +2
Query: 203 GMENRDKTDDQVTIDCAEAIKKYNVGIKCATITPDEKRVEEFKLKKMWKSPNGTIRNILG 382
G+ +RD D + + +K + G CATITP++ + W +P R G
Sbjct: 336 GVIHRDIKSDNILLGMDGQVKLTDFGF-CATITPEQNKRSTMVGTPYWMAPEVVTRKQYG 394
Query: 383 GTV 391
V
Sbjct: 395 PRV 397
>SB_33334| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 761
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/56 (23%), Positives = 27/56 (48%)
Frame = +2
Query: 320 EEFKLKKMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWDKPIIIGRHAHADQY 487
EE M P + +G + ++ + +N+ RL+ +D P+++ R H D +
Sbjct: 461 EELMNLNMKNGPQRLVSLDVGTSWDQKERVFRNLARLIGPYDDPVLVHRWVHGDAF 516
>SB_7874| Best HMM Match : PSI (HMM E-Value=8.4)
Length = 275
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/57 (24%), Positives = 30/57 (52%)
Frame = +2
Query: 317 VEEFKLKKMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWDKPIIIGRHAHADQY 487
+ F L K+P+ T+ G + ++ + +N+ RL+ +D P+++ R H D +
Sbjct: 37 LNRFPLNHDVKTPSFTV----GTSWDQKERVFRNLARLIGPYDDPVLVHRWVHGDAF 89
>SB_7343| Best HMM Match : EGF (HMM E-Value=0)
Length = 1233
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 50 CYSRHRYNMSKIKAGPVVDILGDEMTRIIW 139
CY + N+ + PVV +LGD +T + W
Sbjct: 18 CYGENSMNVQLPRQIPVVILLGDRLTFVPW 47
>SB_48254| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)
Length = 1414
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 56 SRHRYNMSKIKAGPVVDILGDEMTRIIWDLIKEKLIIPFLDIELHV 193
+R Y +K V+ + DEM + D+I + ++ FL I L V
Sbjct: 40 ARDTYEKGALKKDHEVEEIDDEMRDCLNDIINDNCLLSFLLIRLRV 85
>SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1743
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/71 (21%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Frame = +2
Query: 131 IIWDLIKEKLIIPFLDIELHV-----YDLGMEN-RDKTDDQVTIDCAEAIKKYNVGIKCA 292
++ + K+K ++P++ +E+ + DL + R T++ V + A+K ++ +
Sbjct: 574 VVCRVFKDKHLLPWIGVEIALNVLRNVDLTRDELRCITNEDVPLATVSAVKMVQFNLQKS 633
Query: 293 TITPDEKRVEE 325
+ P+E+RV +
Sbjct: 634 DVEPNEQRVRQ 644
>SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35)
Length = 642
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 158 LIIPFLDIELHVYDLGMENRDKTDDQVTIDCAEAIKKYNVGIKCA 292
L++ L +E+ LG N+DK +T D IK+Y K A
Sbjct: 442 LLLIVLGLEIAAAVLGYINKDKIQSDLTDDIIRNIKEYPKNNKAA 486
>SB_41606| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1144
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/71 (21%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Frame = +2
Query: 131 IIWDLIKEKLIIPFLDIELHV-----YDLGMEN-RDKTDDQVTIDCAEAIKKYNVGIKCA 292
++ + K+K ++P++ +E+ + DL ++ R T++ V + A+K ++ +
Sbjct: 690 VVCRVFKDKHLLPWIGVEIALNVLRNVDLTRDDLRWITNEDVPLATVSAVKMVQFNLQKS 749
Query: 293 TITPDEKRVEE 325
+ P+E+RV +
Sbjct: 750 DVEPNEQRVRQ 760
>SB_39815| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 693
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 251 AEAIKKYNVGIKCATITPDEKRVEE 325
+E KKY I+C + +E+RV E
Sbjct: 659 SEKFKKYRRSIRCVNVRVEERRVNE 683
>SB_20069| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 140 DLIKEKLIIPFLDIELHVYDLGMENRDKTDDQVT 241
D++ KL+ L+ + HVYDL ++ +K VT
Sbjct: 159 DIMMNKLVATTLESKFHVYDLRTQHPEKGFASVT 192
>SB_4072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1364
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/71 (21%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Frame = +2
Query: 131 IIWDLIKEKLIIPFLDIELHV-----YDLGMEN-RDKTDDQVTIDCAEAIKKYNVGIKCA 292
++ + K+K ++P++ +E+ + DL + R T++ V + A+K ++ +
Sbjct: 688 VVCRVFKDKHLLPWIGVEIALNVLRNVDLTRDELRCITNEDVPLATVSAVKMVQFNLQKS 747
Query: 293 TITPDEKRVEE 325
+ P+E+RV +
Sbjct: 748 DVKPNEQRVRQ 758
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,661,314
Number of Sequences: 59808
Number of extensions: 350713
Number of successful extensions: 755
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -