Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302H06f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31024| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-09)                 30   1.0  
SB_38248| Best HMM Match : 7tm_1 (HMM E-Value=1e-06)                   29   2.3  
SB_19274| Best HMM Match : SET (HMM E-Value=2.7e-06)                   29   3.1  
SB_31085| Best HMM Match : RVT_1 (HMM E-Value=0.0094)                  27   7.1  
SB_21992| Best HMM Match : LRR_1 (HMM E-Value=3.2e-07)                 27   7.1  

>SB_31024| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-09)
          Length = 397

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 57 RYLWAPVPLNTRWAVSS 7
          RY+WAP+PL  RW  ++
Sbjct: 40 RYVWAPIPLQIRWTCAT 56


>SB_38248| Best HMM Match : 7tm_1 (HMM E-Value=1e-06)
          Length = 374

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 57  RYLWAPVPLNTRWAVSS 7
           RY+WAPVP + RW  ++
Sbjct: 78  RYVWAPVPASFRWTAAA 94


>SB_19274| Best HMM Match : SET (HMM E-Value=2.7e-06)
          Length = 309

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = -3

Query: 159 DENIY*HFEGRG---SRCDYT*DLRTYISRWVAHLRRRYLWAPVPLNT 25
           D  ++ H E R    + C     + T+ +R+  HL +   WAP+P+ T
Sbjct: 230 DNELFYHRENRPVSTTICQRIGTMATFTNRYNGHLYQSVQWAPLPIGT 277


>SB_31085| Best HMM Match : RVT_1 (HMM E-Value=0.0094)
          Length = 270

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 359 LSGLCLWGDSFSVSFGFISPRVYWIFRRLSNRNRHNYF 472
           +S L  W D +S+SF  I   +  I R+  N   H Y+
Sbjct: 146 ISRLASWADQWSMSFQAIKCNMIRISRKTRNNINHLYY 183


>SB_21992| Best HMM Match : LRR_1 (HMM E-Value=3.2e-07)
          Length = 534

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 359 LSGLCLWGDSFSVSFGFISPRVYWIFRRLSNRNRHNYF 472
           +S L  W D +S+SF  I   +  I R+  N   H Y+
Sbjct: 494 ISRLASWADQWSMSFQAIKCNMIRISRKTRNNINHLYY 531


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,548,690
Number of Sequences: 59808
Number of extensions: 264444
Number of successful extensions: 571
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)