Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302H05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    38   0.001
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   6.8  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    25   9.0  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   9.0  
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    25   9.0  

>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 26/105 (24%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
 Frame = +1

Query: 118 EVSFKASGIVDYNNVLKHMATGGSSLNAPTDTIQCIDIVLKQGTLESYVKAGRQYFMRPA 297
           E S + S  ++ + + + + +  SS      +I  +D++LK+   E+       +F    
Sbjct: 110 EFSIQKSSKINLHTLSQFVNSKYSSDPQVLSSIMFLDLLLKKKPSETLFGFMHSFFTGE- 168

Query: 298 SPIDLGDGLEMWTGLFQSAIFTSKAF--INVDVAHKGFPKNQPMI 426
           + + LG G+E W G +QS I  ++ F  +NVD++   F +N  ++
Sbjct: 169 NGVSLGGGVEAWKGFYQS-IRPNQGFMSVNVDISSSAFWRNDSLL 212


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1272

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
 Frame = -3

Query: 396  VCNINVDEGFR----CKYSRLE*TSPHLEPVAQVNRRCRTHEVLSACFHI*FQCSLF*HY 229
            +CNI+V +  R         L     H + +A     C  H++     HI F+C  +  Y
Sbjct: 830  LCNIDVPDDKREVVEAAIEELLTVYEHFD-IATTLLSCWDHQLYQVILHISFKCGRYEDY 888

Query: 228  VNTLYGVSWCIKG 190
            +  +  + W  KG
Sbjct: 889  IEAILAL-WKQKG 900


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 350 DWNKPVHISSPSPKSIGDA 294
           +WN P+  +SPSP    D+
Sbjct: 181 EWNVPLRETSPSPSETADS 199


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -2

Query: 475 DPLDDWGPNENH 440
           DPLD WG  ENH
Sbjct: 41  DPLDYWGKWENH 52


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 251 NVPCFNTMSIHCMVSVGALRDDP 183
           NVP F  ++I C+  + +L   P
Sbjct: 244 NVPDFRNVTIECLTEIASLTSQP 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,414,477
Number of Sequences: 5004
Number of extensions: 53220
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)