Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302H05f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41289| Best HMM Match : No HMM Matches (HMM E-Value=.) 91 5e-19
SB_19691| Best HMM Match : NDUF_B7 (HMM E-Value=6.1) 52 2e-07
SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06) 30 1.3
SB_36978| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_53781| Best HMM Match : Keratin_B2 (HMM E-Value=0.16) 28 4.1
SB_23290| Best HMM Match : SRCR (HMM E-Value=0) 28 4.1
SB_35560| Best HMM Match : zf-B_box (HMM E-Value=1e-20) 28 4.1
SB_648| Best HMM Match : SHQ1 (HMM E-Value=2) 28 5.4
SB_32850| Best HMM Match : GRP (HMM E-Value=0.089) 27 7.1
SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_5992| Best HMM Match : 7tm_1 (HMM E-Value=1e-30) 27 9.4
>SB_41289| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 91.1 bits (216), Expect = 5e-19
Identities = 57/161 (35%), Positives = 80/161 (49%), Gaps = 4/161 (2%)
Frame = +1
Query: 4 AFDQTKNCYSLTPLPKITTERYGVKVVIKDMNG-KDMPFEVSFKASGIVDYNNVLKHMAT 180
AFD +N Y PLP + +E +KV + +G K+ F + K +G+V L
Sbjct: 73 AFDGRRNLYCREPLP-LKSEEASLKVTLPGTDGGKERKFTLKIKEAGLVSIKE-LDQFLN 130
Query: 181 GGSSLNAPTDTIQCIDIVLKQGTLESYVKAGRQYFMRPASPI-DLGDGLEMWTGLFQSAI 357
G P D IQ +DIVL+Q + GR +F P DLG G E+WTG +QS
Sbjct: 131 GEFRGKVPQDAIQGMDIVLRQMPSMKFTAVGRCFFPPPNGHCHDLGGGCELWTGFYQSVR 190
Query: 358 FTS--KAFINVDVAHKGFPKNQPMIDAFTRDFRLDPNRPMD 474
+ +N+DV+ KGF K+ P+ID R D NR +D
Sbjct: 191 PSQWKTMLLNIDVSSKGFQKSMPVIDFMLEILRQDRNRVLD 231
>SB_19691| Best HMM Match : NDUF_B7 (HMM E-Value=6.1)
Length = 154
Score = 52.4 bits (120), Expect = 2e-07
Identities = 38/128 (29%), Positives = 59/128 (46%), Gaps = 2/128 (1%)
Frame = +1
Query: 76 KVVIKDMNGKDMPFEVSFKASGIVDYNNVLKHMATGGSSLNAPTDTIQCIDIVLKQGTLE 255
+VV+ N +D F+V+ K V + K A G+ P +TIQ +D+VL+
Sbjct: 4 EVVLPTDNSQDKKFKVTLKWVSQVSLYALEK--ALEGTCNQIPFETIQALDVVLRHLPSM 61
Query: 256 SYVKAGRQYFMRP-ASPIDLGDGLEMWTGLFQSAIFTS-KAFINVDVAHKGFPKNQPMID 429
Y GR +F P L G E+W G QS + K +N+DV+ F K Q +++
Sbjct: 62 KYTPVGRSFFSPPDGYDFPLERGREVWFGFHQSIRPSQWKMLLNIDVSATAFYKCQSVVE 121
Query: 430 AFTRDFRL 453
R+
Sbjct: 122 FMCEVLRI 129
>SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06)
Length = 1977
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = -3
Query: 231 YVNTLYGVSWCIKG*STRCHMLQNIIVVYYTTSFE*HFKRHVFAVHIFDHHFYTISLS 58
Y+ + + + ++ S C + +IV YT+S H +RH V+I YT SLS
Sbjct: 1653 YIVSAFTSTLSVRITSIHCQCVYIVIVSAYTSSLSVHIRRHCQCVYIVS--AYTSSLS 1708
>SB_36978| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 283
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 394 HKGFPKNQPMIDAFTRDFRLDPNRPMDRQTRP 489
HKG+P + + +F L P PM+R+ P
Sbjct: 106 HKGYPYKKAAFERLCIEFGLPPGLPMERRAEP 137
>SB_53781| Best HMM Match : Keratin_B2 (HMM E-Value=0.16)
Length = 561
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = -1
Query: 398 LCATSTLMKAFDVNIADWNKPVH 330
+C+ ++L +A +VN+ADW PVH
Sbjct: 209 VCSLTSLARATNVNVADW--PVH 229
>SB_23290| Best HMM Match : SRCR (HMM E-Value=0)
Length = 478
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = -3
Query: 408 WETFVCNINVDEGFRCKYSRLE*TSPHLEPVAQVNRR 298
W T C + D G RC R E S L P A N R
Sbjct: 218 WGTHNCGHDEDAGARCSQGRYEDISNDLVPAAPSNVR 254
>SB_35560| Best HMM Match : zf-B_box (HMM E-Value=1e-20)
Length = 470
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = -1
Query: 329 ISSPSPKSIGDAGRMKYCLPAFTYDSNVPCFNTMSIHCM 213
++ P K + D C+ FT +PC +T HC+
Sbjct: 1 MAKPGSKQLEDEVTCAICIEHFTDPRLLPCLHTFCRHCL 39
>SB_648| Best HMM Match : SHQ1 (HMM E-Value=2)
Length = 327
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 151 YNNVLKHMATGGSSLNAPTDTIQCIDIVLKQGTLESYV 264
Y NV+K T SSL AP+ + D +L QG + + +
Sbjct: 123 YPNVIKTYGTKVSSLQAPSLPLVSFDTLLGQGVIYNII 160
>SB_32850| Best HMM Match : GRP (HMM E-Value=0.089)
Length = 676
Score = 27.5 bits (58), Expect = 7.1
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Frame = -1
Query: 386 STLMKAFDVNIADWNKPVHI------SSPSPK--SIGDAGRMKYCLPAFTYDSNVPCFNT 231
++L +A +VN+ADW H+ SSP+PK S G+ + +S C
Sbjct: 351 TSLARATNVNVADWPVRAHVLLTHRRSSPNPKLTSRGEKQSFDFMAAVLRVESYPVC--- 407
Query: 230 MSIHCMVSV 204
+ +H M +V
Sbjct: 408 LLVHFMAAV 416
>SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6500
Score = 27.5 bits (58), Expect = 7.1
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = +1
Query: 73 VKVVIKDMNGKDMPFEVSFKASGIVDYNNVLKHMATGGSSLNAPTDTIQCI-DIVLKQGT 249
V VVI D +V SG++ N L +A GG ++ + D V+ G
Sbjct: 5698 VMVVISDRESDSSLMDVKAAVSGLIQDNIRLISVALGGQGNENELKSVAPVPDAVISVGI 5757
Query: 250 LESYVKAG 273
+S KAG
Sbjct: 5758 NDSSSKAG 5765
>SB_5992| Best HMM Match : 7tm_1 (HMM E-Value=1e-30)
Length = 302
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 231 YVNTLYGVSWCIKG*STRCHMLQNIIVVYYTTSF 130
Y+ + GV WC+ G T H+L ++ YT F
Sbjct: 121 YLGVVAGV-WCLSGIITTLHILYRYHIISYTHFF 153
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,121,499
Number of Sequences: 59808
Number of extensions: 413902
Number of successful extensions: 882
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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