Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302H05f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   5.8  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    21   7.7  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   7.7  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   7.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.7  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 280 YFMRPASPIDLGDGLEMWTGLFQSAIFTSKA 372
           Y +R  +   LGD  ++ TG+   A+ T +A
Sbjct: 30  YLVRSRTLTSLGDLSDVHTGILIKALLTVQA 60


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 344 NKPVHISSPSP 312
           N+PV+IS P P
Sbjct: 100 NRPVYISQPRP 110



 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 344 NKPVHISSPSP 312
           N+PV+IS P P
Sbjct: 156 NRPVYISQPRP 166


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -2

Query: 115 TACLCRSYL*SPLLHHISQW 56
           T C+   +  SP  H++S W
Sbjct: 330 TVCVLNVHFRSPSTHNMSPW 349


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 424 IDAFTRDFRLDPNRPMDRQTRPVLLKLSM 510
           +D   R  R+D    M+RQ    ++ LSM
Sbjct: 522 MDRMDRTNRMDRMNRMNRQMNEYMMALSM 550


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 292 PASPIDLGDGLEMW 333
           P+S +  G+GL MW
Sbjct: 210 PSSGLQPGEGLPMW 223


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,525
Number of Sequences: 438
Number of extensions: 3769
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)