Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302H04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    29   0.42 
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    29   0.42 
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    29   0.42 
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    29   0.42 
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    26   3.9  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    25   5.2  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   9.0  

>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 339 LIVDLFFINSGFYFSFGVCFGVVN 410
           LI+ LF I+ G++F+F   F V+N
Sbjct: 276 LILSLFLISFGYFFTFFAVFSVIN 299


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 339 LIVDLFFINSGFYFSFGVCFGVVN 410
           LI+ LF I+ G++F+F   F V+N
Sbjct: 276 LILSLFLISFGYFFTFFAVFSVIN 299


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 339 LIVDLFFINSGFYFSFGVCFGVVN 410
           LI+ LF I+ G++F+F   F V+N
Sbjct: 276 LILSLFLISFGYFFTFFAVFSVIN 299


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 339 LIVDLFFINSGFYFSFGVCFGVVN 410
           LI+ LF I+ G++F+F   F V+N
Sbjct: 276 LILSLFLISFGYFFTFFAVFSVIN 299


>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 520 YKYVYKFKKTAFCIFIY 470
           Y Y+Y + K A C F+Y
Sbjct: 418 YLYIYDYTKAAACFFLY 434


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 11  LVFFYYFRLQNNFFLMRVGH 70
           L+F Y  R   NFFL+R  H
Sbjct: 290 LLFLYKIRYPENFFLLRGNH 309


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +2

Query: 20   FYYFRLQNNFFLMRVGHSS 76
            F Y  LQNN FL RV  SS
Sbjct: 1009 FIYGSLQNNSFLSRVSPSS 1027


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,927,116
Number of Sequences: 5004
Number of extensions: 35576
Number of successful extensions: 76
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)